Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OSC7112_RS06865 Genome accession   NC_019729
Coordinates   1605191..1606855 (+) Length   554 a.a.
NCBI ID   WP_015175226.1    Uniprot ID   -
Organism   Oscillatoria nigro-viridis PCC 7112     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1600191..1611855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSC7112_RS06840 (Osc7112_1368) - 1600713..1601027 (+) 315 WP_015175221.1 hypothetical protein -
  OSC7112_RS06845 (Osc7112_1369) thiL 1601060..1602190 (+) 1131 WP_015175222.1 thiamine-phosphate kinase -
  OSC7112_RS06850 (Osc7112_1370) - 1602240..1602884 (-) 645 WP_015175223.1 hypothetical protein -
  OSC7112_RS06855 (Osc7112_1371) - 1603266..1604456 (-) 1191 WP_015175224.1 cysteine desulfurase family protein -
  OSC7112_RS06860 (Osc7112_1372) - 1604595..1604999 (-) 405 WP_015175225.1 hypothetical protein -
  OSC7112_RS06865 (Osc7112_1373) comA 1605191..1606855 (+) 1665 WP_015175226.1 DUF655 domain-containing protein Machinery gene
  OSC7112_RS06870 (Osc7112_1374) - 1607184..1607828 (+) 645 WP_015175227.1 hypothetical protein -
  OSC7112_RS06875 (Osc7112_1375) cax 1607963..1609063 (-) 1101 WP_015175228.1 calcium/proton exchanger -
  OSC7112_RS06880 (Osc7112_1376) - 1609258..1610007 (+) 750 WP_015175229.1 Uma2 family endonuclease -
  OSC7112_RS06885 (Osc7112_1377) - 1610233..1610853 (-) 621 WP_015175230.1 DUF6391 domain-containing protein -
  OSC7112_RS06890 (Osc7112_1379) - 1611030..1611743 (-) 714 WP_015175232.1 MORN repeat-containing protein -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 60796.34 Da        Isoelectric Point: 8.9877

>NTDB_id=54861 OSC7112_RS06865 WP_015175226.1 1605191..1606855(+) (comA) [Oscillatoria nigro-viridis PCC 7112]
MAVLYYHLLGFCCAGLVAINLAGCGQTKQDVQNLPLSLAPLPQDPLLQVYFNQSIASSYTEPYRQQTRPGDDLENSIAVA
VASAGSTVDVAVQEFRLPGIARVLAERGRSGIKVRLIVEHMYSRPWSDFTAQELAKLPERERDRYNEFVQLADRNKDGKL
TADEIKQNDALVIVKDAGIPVIDDTADGSKGSGLMHHKFVVIDGKTVIVTSANFTTSDIHGDFKTAASRGNANNLLKIEN
PQLAQLFTQEFNIMWGDGPGGKPDSKFGIKKPFRQVQKVKIGNATVAVQFSPTSQTLPWEKSPNGLINRTLGSAKKSVDL
ALFVFSAQRLSNTLEIEASRGVAVRALIDSNFIYRSYSEGLDMMGATLMQDCKLETDNRPWRKPLTAVGVPLLPMGDRLH
HKFGVVDGKTVLTGSHNWSEAANRGNDETLLAIESPTVVAHFEREFDRLYKGATLGIPARIKQRIDAKKKECDSLQAASK
SPSAKPQIAPGKKLVNLNAASQEELETLPGVGPKLAERIIAARQQQPFTSLEDVARVQGVGDKILDKWRDRVTW

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=54861 OSC7112_RS06865 WP_015175226.1 1605191..1606855(+) (comA) [Oscillatoria nigro-viridis PCC 7112]
GTGGCTGTATTGTATTATCATTTACTCGGTTTCTGTTGTGCGGGGCTGGTGGCGATCAATCTGGCGGGCTGCGGACAAAC
AAAGCAAGACGTGCAGAATTTACCTCTCAGTCTGGCTCCATTGCCTCAAGACCCCTTGTTGCAAGTATACTTCAATCAGT
CGATCGCTTCGAGTTATACAGAGCCTTACCGCCAGCAAACTAGACCTGGAGATGATTTAGAAAACTCGATCGCTGTGGCC
GTAGCCAGTGCTGGATCGACGGTAGATGTAGCGGTTCAGGAGTTTCGCTTGCCCGGGATTGCGAGGGTTTTGGCCGAACG
AGGGCGATCGGGAATTAAAGTGAGATTAATTGTCGAACATATGTATAGTCGCCCTTGGAGCGATTTTACAGCGCAGGAGT
TAGCGAAATTACCGGAAAGAGAGCGCGATCGTTATAACGAATTTGTGCAACTTGCCGATCGCAATAAAGACGGTAAATTG
ACTGCCGATGAAATCAAGCAAAATGATGCTTTGGTAATTGTCAAGGATGCGGGTATTCCTGTAATTGACGATACTGCTGA
CGGCAGTAAAGGCAGCGGTTTGATGCACCACAAATTTGTAGTAATTGACGGCAAAACCGTAATCGTCACTTCTGCTAATT
TTACAACAAGCGATATACACGGAGATTTCAAGACAGCAGCAAGTCGCGGCAATGCGAACAATTTGCTGAAAATTGAAAAT
CCTCAATTAGCGCAACTATTTACTCAAGAATTTAACATCATGTGGGGCGACGGGCCCGGAGGCAAACCGGACAGCAAATT
TGGCATCAAAAAGCCGTTTCGTCAAGTGCAAAAAGTGAAAATAGGAAATGCGACAGTTGCGGTGCAATTTTCGCCGACTT
CCCAGACTTTGCCTTGGGAAAAAAGCCCTAACGGTTTGATAAATCGAACTTTGGGTAGTGCGAAAAAGTCGGTTGATTTG
GCACTGTTTGTATTTTCGGCTCAGCGGTTGTCAAATACTTTGGAAATTGAAGCTAGCCGGGGAGTTGCGGTGCGAGCTTT
AATAGACTCTAATTTTATTTATCGCTCTTACAGTGAAGGGTTGGATATGATGGGGGCGACTTTGATGCAAGATTGCAAGT
TAGAAACTGACAATCGCCCTTGGAGAAAGCCGCTGACTGCGGTGGGAGTGCCGCTGTTACCAATGGGCGATCGCCTGCAC
CACAAATTCGGCGTTGTGGACGGCAAAACGGTGCTTACAGGTTCTCACAACTGGAGTGAGGCGGCAAATCGCGGGAATGA
CGAGACGCTGCTGGCGATCGAGAGTCCCACAGTTGTGGCCCATTTTGAGCGGGAGTTCGATCGGCTTTACAAAGGTGCAA
CCTTGGGAATTCCCGCCCGAATCAAACAGAGAATTGACGCTAAGAAAAAAGAGTGCGATTCACTACAAGCAGCATCAAAA
TCTCCGAGTGCTAAACCTCAGATTGCTCCGGGTAAAAAGTTAGTTAATTTAAATGCAGCGAGTCAGGAAGAATTAGAAAC
CTTGCCTGGGGTTGGCCCGAAGTTAGCCGAGAGAATTATTGCAGCGCGGCAACAGCAACCTTTCACCTCTTTGGAAGATG
TGGCACGGGTACAGGGAGTCGGCGACAAGATTTTAGATAAATGGCGCGATCGAGTAACTTGGTAG

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(308-449)

PLD-like domain (PLDc_2)

(81-255)

Helix-hairpin-helix motif (HHH_3)

(493-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

48.82

99.458

0.486

Multiple sequence alignment