Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GEI7407_RS16210 Genome accession   NC_019703
Coordinates   3994292..3995719 (-) Length   475 a.a.
NCBI ID   WP_015173287.1    Uniprot ID   K9SBY8
Organism   Geitlerinema sp. PCC 7407     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3989292..4000719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEI7407_RS16190 (GEI7407_3251) priA 3990167..3992683 (+) 2517 WP_015173283.1 primosomal protein N' -
  GEI7407_RS16195 (GEI7407_3252) - 3992789..3993160 (+) 372 WP_015173284.1 hypothetical protein -
  GEI7407_RS16200 (GEI7407_3253) - 3993407..3993832 (+) 426 WP_015173285.1 hypothetical protein -
  GEI7407_RS16205 (GEI7407_3254) - 3993851..3994306 (+) 456 WP_015173286.1 NUDIX hydrolase -
  GEI7407_RS16210 (GEI7407_3255) comA 3994292..3995719 (-) 1428 WP_015173287.1 phospholipase D-like domain-containing protein Machinery gene
  GEI7407_RS16215 (GEI7407_3256) - 3995802..3996488 (-) 687 WP_015173288.1 GvpL/GvpF family gas vesicle protein -
  GEI7407_RS16220 (GEI7407_3257) - 3996518..3996904 (-) 387 WP_041268496.1 hypothetical protein -
  GEI7407_RS16225 (GEI7407_3258) - 3996901..3998001 (-) 1101 WP_150109808.1 hypothetical protein -
  GEI7407_RS16230 (GEI7407_3259) - 3998208..3998870 (-) 663 WP_015173291.1 Na(+)/H(+) antiporter subunit B -
  GEI7407_RS16235 (GEI7407_3260) - 3998883..3999464 (-) 582 WP_015173292.1 DUF4040 domain-containing protein -
  GEI7407_RS16240 (GEI7407_3261) - 3999451..3999732 (-) 282 WP_015173293.1 monovalent cation/H(+) antiporter subunit G -
  GEI7407_RS16245 (GEI7407_3262) - 3999729..3999980 (-) 252 WP_015173294.1 hypothetical protein -
  GEI7407_RS16250 (GEI7407_3263) - 3999977..4000366 (-) 390 WP_015173295.1 Na+/H+ antiporter subunit E -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 52431.71 Da        Isoelectric Point: 5.2143

>NTDB_id=54858 GEI7407_RS16210 WP_015173287.1 3994292..3995719(-) (comA) [Geitlerinema sp. PCC 7407]
MANQRQTQRCWPVWAWIVLLALGAGGCAPSQLQDSTPPSLPQDLLIQVYFNHGEGTYTDPYRQQPHPGTDLEAQIVEAIA
GAQSSVELAVQEFRLPRIAQALRDRQRAGVKVRVIIENTYRQAWSGLPAAEVAALSDRERDRYEEGLRLIDENGDGTLSP
AEIRDRDAIALLEQARIPLIDDREDGTAGSGLMHHKFVVVDGRHVIVTSANFTLSDVHGDLRSPDTQGNANNLLKIDSPE
LAALFQEEFNQMWGDGPGGQRDSRFGLKKTLRSPETVVLGSSVVRVQFSPTSPTLPFGQSTNGLIGRTLNSAAESVNLAL
FVFSEQALANILEQRHDRGAQVRALIDPSFAFRDYSEGLDLLGVALAPKNCDYEADNRPWRNPVATVGTPTLPRGDLLHH
KFAVVDQRIVITGSHNWSPAGNHTNDETLLVVQNPIVAAHFEREFERLYETARLGLTPQVQERIDEQARRCSAQA

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=54858 GEI7407_RS16210 WP_015173287.1 3994292..3995719(-) (comA) [Geitlerinema sp. PCC 7407]
ATGGCAAACCAGCGGCAAACCCAGCGGTGCTGGCCGGTGTGGGCGTGGATTGTGCTGTTGGCCCTGGGGGCGGGGGGCTG
CGCCCCGAGCCAGCTCCAGGACTCGACCCCGCCTTCGCTGCCCCAGGATCTGCTGATCCAGGTGTATTTCAACCACGGCG
AGGGCACCTACACCGATCCCTATCGCCAGCAGCCCCACCCTGGCACCGACCTCGAGGCCCAGATCGTCGAGGCGATCGCC
GGGGCACAGTCCTCGGTAGAGCTAGCTGTGCAGGAGTTTCGGCTGCCCCGCATTGCCCAGGCCCTGCGCGATCGCCAGCG
AGCGGGGGTGAAGGTGCGGGTGATTATCGAAAATACCTATCGCCAAGCCTGGAGCGGCCTGCCTGCGGCGGAGGTGGCGG
CCCTAAGCGATCGAGAGCGCGATCGCTACGAAGAGGGCCTTCGCCTCATTGACGAAAACGGCGACGGGACTCTCAGCCCC
GCCGAGATTCGCGATCGAGATGCGATCGCCCTGCTAGAGCAAGCGCGCATTCCCCTGATTGACGATCGCGAAGACGGCAC
GGCGGGCAGCGGCCTGATGCACCACAAGTTTGTGGTGGTTGATGGGCGGCACGTGATCGTCACCTCCGCCAACTTCACCC
TGAGCGATGTTCACGGCGACTTGCGATCGCCCGACACCCAGGGCAACGCCAACAATTTGCTGAAAATTGACAGCCCCGAG
CTAGCGGCTCTTTTTCAAGAGGAATTCAACCAGATGTGGGGCGACGGTCCCGGCGGCCAGCGCGACAGCCGGTTTGGCCT
GAAAAAAACCCTGCGATCGCCGGAGACCGTTGTCTTGGGTTCCAGCGTTGTGCGCGTCCAGTTCTCGCCCACCAGCCCCA
CCTTGCCCTTTGGCCAAAGCACCAACGGTCTGATTGGCCGCACCCTCAACAGCGCCGCCGAGTCCGTTAACCTGGCCCTG
TTTGTTTTCTCGGAGCAGGCCCTGGCCAACATTCTCGAGCAGCGCCACGATCGCGGGGCTCAGGTGCGCGCCCTGATCGA
CCCCAGCTTCGCCTTTCGGGACTACAGCGAGGGCCTCGACCTCTTGGGCGTCGCCCTCGCTCCCAAGAACTGCGACTACG
AAGCCGACAACCGCCCCTGGCGCAACCCCGTGGCCACCGTAGGCACGCCGACCCTGCCTCGGGGAGACTTGCTGCACCAC
AAGTTCGCCGTCGTGGACCAGCGCATCGTCATCACCGGCTCCCACAACTGGAGCCCCGCCGGCAACCACACCAACGACGA
AACCCTGCTGGTGGTCCAAAATCCCATCGTGGCGGCCCACTTTGAGCGGGAATTTGAGCGGCTGTACGAGACTGCTCGCC
TGGGGCTCACGCCCCAGGTGCAAGAGCGCATCGACGAGCAGGCGCGCCGCTGCTCAGCCCAGGCGTGA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(307-448)

PLD-like domain (PLDc_2)

(75-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9SBY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

52.495

97.053

0.509

Multiple sequence alignment