Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   GEI7407_RS14580 Genome accession   NC_019703
Coordinates   3612944..3614047 (+) Length   367 a.a.
NCBI ID   WP_015172966.1    Uniprot ID   K9S9W2
Organism   Geitlerinema sp. PCC 7407     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3607944..3619047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEI7407_RS14565 (GEI7407_2929) - 3608997..3610223 (-) 1227 WP_315863826.1 transposase -
  GEI7407_RS14570 (GEI7407_2930) - 3610632..3611051 (-) 420 WP_015172964.1 peptidylprolyl isomerase -
  GEI7407_RS14575 (GEI7407_2931) purT 3611159..3612394 (-) 1236 WP_015172965.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  GEI7407_RS14580 (GEI7407_2932) pilM 3612944..3614047 (+) 1104 WP_015172966.1 type IV pilus assembly protein PilM Machinery gene
  GEI7407_RS14585 (GEI7407_2933) - 3614055..3614807 (+) 753 WP_015172967.1 PilN domain-containing protein -
  GEI7407_RS14590 (GEI7407_2934) - 3614810..3615550 (+) 741 WP_015172968.1 hypothetical protein -
  GEI7407_RS14595 (GEI7407_2935) - 3615664..3618087 (+) 2424 WP_015172969.1 type IV pilus secretin family protein -
  GEI7407_RS14600 (GEI7407_2936) - 3618413..3618694 (+) 282 WP_015172970.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 40355.18 Da        Isoelectric Point: 4.3200

>NTDB_id=54856 GEI7407_RS14580 WP_015172966.1 3612944..3614047(+) (pilM) [Geitlerinema sp. PCC 7407]
MVNSLKNLFSKSNKGIGIELTPERINIARLRKQGQGYKLVTLTSVEMPEGVFQEGQIINAPAIAELLQSTLEENKIKVRN
AATAVPGREAVTRIIPVPAELDDRELREMILNQEAGLYLPFPREEADVDYQKLGFFVDEDGIEKVRVLLVATRKEVTDIY
LNTFQEAGIQVDVLEISSFSLIRTIREQLRQFAPQEAVAIVDIEFENTEISIVVDGVPQFSRTVPIGTYQIQSALSRAMN
LPPSRNTELLQGMTIPVNPMDSVGGKTAAGNPGTAAMLRVLGELADELRRSIDFYLNQDENLEVAQLLLAGPGGGIGQID
EFFTQRLSLPASQIDPVDALSLEYEGELTPMQRPGLGVVLGLGLREV

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=54856 GEI7407_RS14580 WP_015172966.1 3612944..3614047(+) (pilM) [Geitlerinema sp. PCC 7407]
GTGGTTAACTCACTCAAAAATTTATTCTCCAAATCAAACAAAGGGATTGGCATCGAGCTGACGCCCGAGCGAATCAACAT
CGCACGGCTCCGCAAGCAAGGTCAGGGCTACAAGCTCGTTACCCTGACCTCCGTCGAAATGCCCGAGGGCGTTTTTCAGG
AAGGACAAATCATCAACGCACCTGCGATCGCCGAGCTGCTCCAGAGCACCCTCGAAGAGAACAAAATCAAGGTGAGGAAC
GCAGCCACGGCGGTCCCTGGCCGAGAAGCCGTCACCCGCATCATCCCCGTCCCCGCAGAGCTAGACGATCGCGAACTGCG
CGAGATGATTCTCAACCAGGAGGCCGGACTCTATCTCCCTTTTCCCCGCGAAGAAGCCGACGTTGACTACCAAAAACTTG
GCTTCTTTGTGGATGAAGACGGCATCGAGAAAGTGCGCGTCCTGCTCGTCGCCACCCGCAAAGAAGTCACCGATATCTAT
CTCAATACCTTCCAAGAAGCTGGAATTCAGGTGGATGTGCTCGAAATCAGCAGTTTTTCGCTGATTCGGACCATTCGTGA
GCAGCTTCGGCAGTTTGCGCCCCAAGAGGCCGTCGCCATCGTTGATATCGAGTTTGAAAATACAGAAATTTCCATTGTTG
TAGACGGGGTGCCGCAGTTTTCGCGCACCGTTCCCATCGGAACCTACCAGATTCAGAGCGCCCTCAGCCGCGCCATGAAC
CTGCCGCCTTCTCGAAACACTGAGCTGCTTCAGGGGATGACGATTCCTGTCAATCCCATGGACAGCGTGGGCGGCAAAAC
AGCCGCTGGAAATCCCGGCACCGCGGCCATGCTGCGGGTTCTGGGCGAGCTAGCGGATGAGCTCCGGCGATCGATTGATT
TTTATTTGAACCAGGACGAAAACTTGGAGGTGGCTCAGCTGCTGCTAGCGGGGCCTGGCGGTGGCATTGGGCAGATTGAT
GAGTTCTTTACGCAGCGTCTCAGCTTGCCGGCAAGTCAAATTGATCCGGTGGATGCGCTGTCTTTGGAGTACGAGGGGGA
GCTAACCCCTATGCAACGCCCAGGGCTAGGAGTGGTGCTGGGATTGGGACTAAGGGAGGTCTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9S9W2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

63.934

99.728

0.638

Multiple sequence alignment