Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   J4N42_RS17515 Genome accession   NZ_CP071860
Coordinates   704778..705875 (+) Length   365 a.a.
NCBI ID   WP_252033876.1    Uniprot ID   A0A9X3HTV4
Organism   Vibrio sp. SCSIO 43135     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 699778..710875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS17485 (J4N42_17460) - 701081..701599 (+) 519 WP_252033871.1 NUDIX hydrolase -
  J4N42_RS17490 (J4N42_17465) - 701720..702067 (-) 348 WP_265689047.1 DUF496 family protein -
  J4N42_RS17495 (J4N42_17470) - 702221..702418 (+) 198 WP_252033873.1 hypothetical protein -
  J4N42_RS17500 (J4N42_17475) - 702456..703115 (+) 660 WP_252033874.1 YceH family protein -
  J4N42_RS17505 (J4N42_17480) - 703099..703416 (+) 318 WP_286036695.1 GIY-YIG nuclease family protein -
  J4N42_RS17510 (J4N42_17485) - 703489..704646 (+) 1158 WP_252033875.1 conjugal transfer protein TraF -
  J4N42_RS17515 (J4N42_17490) luxP 704778..705875 (+) 1098 WP_252033876.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  J4N42_RS17520 (J4N42_17495) luxQ 705872..708445 (+) 2574 WP_353505400.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  J4N42_RS17525 (J4N42_17500) - 708473..709138 (-) 666 WP_252033878.1 PilZ domain-containing protein -
  J4N42_RS17530 (J4N42_17505) - 709294..710556 (-) 1263 WP_252033879.1 hydroxymethylglutaryl-CoA reductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41560.57 Da        Isoelectric Point: 4.7297

>NTDB_id=548523 J4N42_RS17515 WP_252033876.1 704778..705875(+) (luxP) [Vibrio sp. SCSIO 43135]
MNNFIKISLLTCCTLANSAQSAQALTDYWSYQDFLDAYPQQAELTQSLASTVRERPIMLSQEQSEPVHISVVYPGQQISD
YWVRNIQAFETRLEKLGVQYQINQVFTRPNVDVRQQSLSLMEAVKNKSDYLIFTLDTTRHRKFVEHVLAANNTKLILQNI
TTPLRAWEDRQPFMYVGFDHATGTRVLEDYYREKFPEGGDYSVLYFSEGYVSDARGNTFIEEMTHHDKYQLKSSFYTKAT
RESGYQAALNAIEKQPDVSFIYACSTDVALGAADALKELNRTDIVLNGWGGGSAELEAIKNNELNVTVMRMNDDTGIAMA
EAIKWDLEGKPVPQVYSGDFELVTAEDSQEKIDGLKKRAFRYSDQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=548523 J4N42_RS17515 WP_252033876.1 704778..705875(+) (luxP) [Vibrio sp. SCSIO 43135]
ATGAATAATTTTATAAAAATATCACTGCTCACATGTTGCACACTCGCTAACTCGGCACAATCGGCTCAGGCTTTAACCGA
CTACTGGAGCTATCAAGATTTCCTTGATGCTTATCCACAGCAGGCTGAATTGACTCAGTCTTTAGCATCGACGGTGCGCG
AGCGCCCTATCATGCTCAGCCAAGAGCAGTCAGAGCCTGTTCATATTTCAGTGGTTTATCCGGGTCAGCAAATTTCCGAT
TATTGGGTTCGGAATATCCAGGCATTTGAGACTCGGCTGGAAAAGCTTGGTGTTCAATATCAAATTAACCAAGTGTTTAC
TCGCCCAAATGTAGATGTTCGTCAACAGAGCTTGTCGTTAATGGAGGCGGTGAAAAACAAGTCTGATTACTTAATCTTCA
CGCTTGATACGACTCGTCACCGTAAGTTCGTAGAACATGTTCTTGCTGCGAATAACACAAAATTGATTTTGCAGAATATC
ACCACGCCACTCAGAGCTTGGGAAGACCGCCAACCTTTTATGTATGTTGGTTTTGACCACGCAACGGGTACGCGAGTGCT
GGAAGATTACTACAGAGAAAAGTTCCCAGAAGGTGGGGATTACTCCGTTTTATACTTCTCGGAAGGTTACGTGAGTGACG
CGCGTGGCAATACCTTTATTGAAGAAATGACTCATCATGATAAATACCAACTGAAGTCGTCGTTTTACACCAAGGCGACT
CGAGAAAGTGGCTATCAGGCAGCATTGAATGCGATTGAAAAGCAGCCTGATGTATCGTTCATTTATGCGTGTTCAACTGA
TGTGGCTTTGGGCGCAGCAGATGCTCTAAAAGAACTCAACCGTACTGATATCGTATTGAATGGTTGGGGCGGCGGCAGTG
CCGAGCTTGAAGCAATTAAGAACAACGAACTTAATGTGACTGTAATGCGCATGAACGATGACACTGGCATTGCGATGGCT
GAAGCCATCAAATGGGATTTGGAAGGCAAGCCTGTACCGCAGGTATATTCGGGTGACTTTGAACTTGTGACTGCAGAAGA
CAGTCAGGAGAAAATAGACGGATTGAAAAAGAGAGCATTTAGGTATTCAGACCAGTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.426

97.808

0.63