Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   J4N42_RS11870 Genome accession   NZ_CP071859
Coordinates   2677342..2677959 (+) Length   205 a.a.
NCBI ID   WP_252028208.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2672342..2682959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS11850 (J4N42_11840) - 2672735..2673652 (-) 918 WP_252028202.1 ABC transporter ATP-binding protein -
  J4N42_RS11855 (J4N42_11845) - 2673859..2675529 (-) 1671 WP_252028203.1 SulP family inorganic anion transporter -
  J4N42_RS11860 (J4N42_11850) can 2675768..2676427 (+) 660 WP_252028205.1 carbonate dehydratase -
  J4N42_RS11865 (J4N42_11855) hpt 2676498..2677028 (-) 531 WP_252028207.1 hypoxanthine phosphoribosyltransferase -
  J4N42_RS11870 (J4N42_11860) opaR 2677342..2677959 (+) 618 WP_252028208.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  J4N42_RS11875 (J4N42_11865) lpdA 2678087..2679517 (-) 1431 WP_252028210.1 dihydrolipoyl dehydrogenase -
  J4N42_RS11880 (J4N42_11870) aceF 2679777..2681666 (-) 1890 WP_252028212.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23766.22 Da        Isoelectric Point: 6.0796

>NTDB_id=548512 J4N42_RS11870 WP_252028208.1 2677342..2677959(+) (opaR) [Vibrio sp. SCSIO 43135]
MDTIAKRPRTRLSPQKRKLQLMEISLEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNHVVRQFSNFLS
DNIDLDLHAKENLSNITNEMINLVIQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVKNMFVKAIERGEVCDEHEPE
DLATLFHGMCYSLFVQANRVKNEAAMHKLINSYLDMLCIYKHEEA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=548512 J4N42_RS11870 WP_252028208.1 2677342..2677959(+) (opaR) [Vibrio sp. SCSIO 43135]
ATGGACACAATAGCTAAAAGACCGCGCACGCGCCTGTCTCCACAAAAGCGCAAACTTCAGCTAATGGAAATTTCATTAGA
GGTATTTGCAAAACGAGGAATTGGCCGCGGAGGTCACGCAGACATTGCTGAAATCGCTCAAGTTTCAGTAGCAACGGTAT
TTAATTACTTCCCTACCCGCGAAGATTTGGTCGACGATGTCCTTAACCACGTAGTTCGTCAATTCTCGAACTTCCTATCA
GACAACATCGATCTTGATCTTCACGCGAAAGAGAACCTTAGCAACATCACTAACGAAATGATCAACCTAGTGATCCAAGA
CTGTCACTGGCTGAAAGTTTGGTTTGAGTGGAGTGCTTCTACTCGCGATGAAGTATGGCCACTGTTTGTTTCAACTAACC
GCACAAACCAATTGCTGGTCAAAAACATGTTTGTAAAAGCAATTGAACGTGGCGAAGTATGCGACGAACACGAACCAGAA
GATCTGGCGACTCTGTTCCACGGCATGTGCTACTCACTGTTCGTTCAAGCTAACCGCGTTAAGAACGAAGCAGCAATGCA
CAAACTAATTAACAGCTACCTTGATATGCTGTGTATCTACAAGCACGAAGAGGCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(25-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

84.236

99.024

0.834
  hapR Vibrio cholerae C6706

75.5

97.561

0.737
  hapR Vibrio cholerae strain A1552

75.5

97.561

0.737