Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   J4N42_RS07620 Genome accession   NZ_CP071859
Coordinates   1688935..1690419 (+) Length   494 a.a.
NCBI ID   WP_252027239.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1683935..1695419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS07605 (J4N42_07600) - 1684979..1685671 (+) 693 WP_252027237.1 AAA family ATPase -
  J4N42_RS07610 (J4N42_07605) - 1685685..1686488 (+) 804 WP_252030805.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  J4N42_RS07615 (J4N42_07610) - 1686510..1688855 (+) 2346 WP_252027238.1 ATP-binding protein -
  J4N42_RS07620 (J4N42_07615) luxO 1688935..1690419 (+) 1485 WP_252027239.1 sigma-54 dependent transcriptional regulator Regulator
  J4N42_RS07625 (J4N42_07620) - 1690400..1691446 (+) 1047 WP_252027240.1 glycosyltransferase family 4 protein -
  J4N42_RS07630 (J4N42_07625) - 1691639..1692832 (+) 1194 WP_252027241.1 glycosyltransferase family 4 protein -
  J4N42_RS07635 (J4N42_07630) - 1693157..1693894 (+) 738 WP_252027242.1 acyltransferase -
  J4N42_RS07640 (J4N42_07635) - 1693887..1695005 (+) 1119 WP_252027243.1 glycosyltransferase -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54953.02 Da        Isoelectric Point: 5.8224

>NTDB_id=548509 J4N42_RS07620 WP_252027239.1 1688935..1690419(+) (luxO) [Vibrio sp. SCSIO 43135]
MRPKVLLVEDSTSLAVLYKQYVKDEPFDLFHVETGREAIAFIERNVPQLIILDLKLPDMSGEDILDWIAEHQVPTAVVIA
TAHGSVDIAVSLIQKGAKDFLEKPIKADRLKTSIALHLKQAKLEHLVEDIEAKFDRNRFHGFLGSCLPMQAVYKIIDSVA
PTSASVFINGESGTGKEVCAEAIHQESQRNKKPFIAINCGAIPKDLMESEVFGHVKGAFTGATADRKGAASLADGGTLFL
DELCEMDLEMQKKLLRFLQTGTFTPLGATKEMKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIEMPALRERGNDI
ALLANHFLKMYAKEDNKKFSGINRDAEALLKKYNWPGNVRQLQNIIRNIVVLNDEAKLSVSHLPEQILKQSASARSNHTP
AATIAAREVIAPTINEQPIPTELESSPQAIEAAPTANKPQTIRPMWQIEREAIQNAIDYCDGNVLNAAVLLELSPSTVYR
KKQAWESEDETTAS

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=548509 J4N42_RS07620 WP_252027239.1 1688935..1690419(+) (luxO) [Vibrio sp. SCSIO 43135]
ATGAGACCAAAAGTATTATTAGTAGAAGATTCAACATCACTGGCTGTGCTCTACAAACAATATGTAAAAGATGAGCCATT
TGATCTCTTTCATGTTGAAACCGGACGTGAAGCCATCGCGTTTATAGAGCGAAACGTACCTCAATTAATCATCCTTGATT
TAAAACTGCCAGATATGTCAGGAGAAGACATTCTAGATTGGATTGCCGAGCATCAAGTTCCAACGGCAGTTGTTATCGCC
ACCGCACACGGCTCGGTCGACATTGCAGTTAGCCTAATTCAAAAAGGTGCAAAAGATTTCTTAGAAAAGCCGATCAAGGC
TGACCGACTTAAAACGTCTATTGCACTTCACCTCAAACAAGCCAAACTCGAACACCTAGTTGAAGACATTGAAGCTAAGT
TCGACAGAAATCGTTTCCATGGCTTTTTGGGATCTTGTTTACCAATGCAAGCGGTCTATAAGATCATCGACTCTGTCGCG
CCCACCAGCGCGAGTGTATTCATTAATGGCGAAAGTGGTACGGGTAAAGAAGTCTGTGCAGAGGCTATCCACCAAGAAAG
CCAGCGTAACAAGAAGCCATTCATCGCGATAAACTGTGGTGCTATTCCAAAAGATCTAATGGAGAGCGAAGTATTTGGTC
ATGTTAAAGGAGCATTTACTGGCGCAACAGCAGACAGAAAGGGTGCAGCCTCTTTAGCCGACGGCGGAACCTTGTTTCTT
GACGAGCTGTGTGAAATGGACTTAGAAATGCAGAAAAAGTTACTGCGTTTCCTCCAGACTGGCACCTTTACGCCCTTAGG
CGCGACGAAAGAAATGAAAGTCGATGTTCGTATTATCTGCGCGACCAACCGAGACCCATTGAAAGAAGTAGAAGAAGGCC
GATTCAGAGAAGACCTCTATTACCGAGTGCACGTGGTTCCGATTGAAATGCCGGCATTGCGAGAACGCGGCAACGACATC
GCCTTACTCGCTAATCATTTTCTTAAGATGTACGCCAAGGAAGACAACAAAAAGTTTTCAGGGATCAATCGCGATGCCGA
AGCTTTACTTAAGAAATACAATTGGCCTGGGAATGTAAGGCAACTGCAAAATATCATTCGCAATATCGTGGTATTAAACG
ATGAAGCAAAACTGTCAGTATCTCACCTGCCAGAGCAAATTCTAAAACAGAGTGCATCAGCTCGGTCAAACCATACTCCG
GCAGCGACAATTGCAGCGCGTGAAGTGATTGCGCCAACTATCAATGAGCAACCTATTCCAACAGAGTTAGAATCTTCACC
ACAGGCGATTGAAGCGGCTCCAACCGCGAACAAACCTCAAACGATTCGTCCAATGTGGCAAATTGAACGTGAAGCTATTC
AAAATGCGATCGATTATTGCGATGGCAATGTACTCAATGCCGCAGTGCTGCTAGAGCTAAGTCCATCTACCGTTTATCGT
AAAAAGCAAGCGTGGGAGTCAGAGGATGAAACCACAGCGAGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(445-481)

Sigma-54 interaction domain (Sigma54_activat)

(147-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.687

96.964

0.482
  pilR Acinetobacter baumannii strain A118

36.566

100

0.366