Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J4N38_RS13885 Genome accession   NZ_CP071857
Coordinates   2941913..2942959 (-) Length   348 a.a.
NCBI ID   WP_031343405.1    Uniprot ID   A0A097QPW4
Organism   Vibrio sp. SCSIO 43145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2936913..2947959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N38_RS13865 (J4N38_13790) csrA 2936972..2937169 (-) 198 WP_229631383.1 carbon storage regulator CsrA -
  J4N38_RS13870 (J4N38_13795) - 2937262..2938449 (-) 1188 WP_239838902.1 aspartate kinase -
  J4N38_RS13875 (J4N38_13800) alaS 2938642..2941224 (-) 2583 WP_252035407.1 alanine--tRNA ligase -
  J4N38_RS13880 (J4N38_13805) recX 2941366..2941830 (-) 465 WP_252035408.1 recombination regulator RecX -
  J4N38_RS13885 (J4N38_13810) recA 2941913..2942959 (-) 1047 WP_031343405.1 recombinase RecA Machinery gene
  J4N38_RS13890 (J4N38_13815) pncC 2943152..2943643 (-) 492 WP_252036650.1 nicotinamide-nucleotide amidase -
  J4N38_RS13895 (J4N38_13820) mutS 2943728..2946292 (+) 2565 WP_252035409.1 DNA mismatch repair protein MutS -
  J4N38_RS13900 (J4N38_13825) lptG 2946363..2947433 (-) 1071 WP_239838898.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37454.91 Da        Isoelectric Point: 4.8016

>NTDB_id=548470 J4N38_RS13885 WP_031343405.1 2941913..2942959(-) (recA) [Vibrio sp. SCSIO 43145]
MDDNKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKQAETQIMYGAGFNREGELIDLGVKNKLVEKAGAWYSYNGDKIGQGKANACKYLRENPAAAQQIDT
KLRELLLTPAEIQPDDAELGEMPEQEEL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=548470 J4N38_RS13885 WP_031343405.1 2941913..2942959(-) (recA) [Vibrio sp. SCSIO 43145]
ATGGACGATAACAAACAGAAAGCGCTCGCCGCTGCGCTCGGTCAGATTGAAAAGCAATTCGGTAAAGGCTCTATTATGCG
CCTTGGTGACAACCGCGCTATGGATGTCGAAACCATCTCTACAGGCTCACTTTCTCTCGACATCGCACTTGGTGCTGGTG
GTCTGCCAATGGGGCGTATCGTTGAAGTATATGGCCCTGAATCTTCAGGTAAAACAACGTTAACCCTTGAGTTGATTGCA
GCAGCACAACGTGAGGGTAAAACTTGTGCCTTTATCGATGCCGAGCACGCTTTGGATCCTGTCTACGCTAAGAAACTGGG
TGTAGATATTGATGCCCTACTGGTTTCTCAGCCAGATACGGGTGAACAAGCGCTTGAGATCTGTGATGCATTAGCTCGAT
CTGGCGCTATCGATGTTATGGTCGTTGACTCAGTTGCGGCTCTAACACCTAAAGCTGAAATTGAAGGGGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCCCAAGCTATGCGTAAGTTAACGGGTAACCTGAAACAGTCAAACTGTAT
GTGTATTTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCTGAAACCACAACGGGTGGTAATGCGC
TAAAATTCTACGCTTCTGTTCGTCTTGATATTCGCCGCACAGGGTCTATCAAGGAAGGTGACGAAGTGGTGGGTAACGAA
ACTCGTATTAAAGTGGTTAAGAACAAGATCGCGGCGCCGTTCAAACAAGCAGAAACTCAGATTATGTACGGCGCAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGTGTGAAGAATAAGCTAGTTGAAAAAGCTGGCGCTTGGTATAGCTACAATG
GTGATAAAATTGGCCAAGGTAAAGCCAATGCATGTAAGTACTTACGTGAAAACCCAGCTGCCGCTCAGCAAATTGACACC
AAATTACGCGAGCTCTTACTGACTCCAGCAGAAATCCAACCAGATGACGCTGAGTTAGGTGAAATGCCAGAGCAAGAAGA
GCTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097QPW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

88.385

100

0.897
  recA Vibrio cholerae O1 biovar El Tor strain E7946

88.385

100

0.897
  recA Pseudomonas stutzeri DSM 10701

74.924

95.115

0.713
  recA Acinetobacter baumannii D1279779

72.141

97.989

0.707
  recA Acinetobacter baylyi ADP1

73.874

95.69

0.707
  recA Neisseria gonorrhoeae MS11

67.241

100

0.672
  recA Neisseria gonorrhoeae MS11

67.241

100

0.672
  recA Neisseria gonorrhoeae strain FA1090

67.241

100

0.672
  recA Glaesserella parasuis strain SC1401

66.193

100

0.67
  recA Ralstonia pseudosolanacearum GMI1000

71.111

90.517

0.644
  recA Helicobacter pylori 26695

60.756

98.851

0.601
  recA Helicobacter pylori strain NCTC11637

60.465

98.851

0.598
  recA Streptococcus pneumoniae TIGR4

58.857

100

0.592
  recA Streptococcus pneumoniae Rx1

58.857

100

0.592
  recA Streptococcus pneumoniae D39

58.857

100

0.592
  recA Streptococcus pneumoniae R6

58.857

100

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.95

91.667

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

92.241

0.583
  recA Streptococcus pyogenes NZ131

61.231

93.391

0.572
  recA Streptococcus mitis SK321

61.3

92.816

0.569
  recA Streptococcus mitis NCTC 12261

61.3

92.816

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

95.115

0.566
  recA Streptococcus mutans UA159

60.615

93.391

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.442

91.667

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

92.241

0.555
  recA Lactococcus lactis subsp. cremoris KW2

59.752

92.816

0.555