Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   J4N38_RS13330 Genome accession   NZ_CP071857
Coordinates   2838376..2838981 (+) Length   201 a.a.
NCBI ID   WP_239837806.1    Uniprot ID   A0A9Q9CTB6
Organism   Vibrio sp. SCSIO 43145     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2833376..2843981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N38_RS13310 (J4N38_13230) - 2833700..2834614 (-) 915 WP_252036647.1 ABC transporter ATP-binding protein -
  J4N38_RS13315 (J4N38_13235) - 2834803..2836473 (-) 1671 WP_239865235.1 SulP family inorganic anion transporter -
  J4N38_RS13320 (J4N38_13240) can 2836827..2837486 (+) 660 WP_239837804.1 carbonate dehydratase -
  J4N38_RS13325 (J4N38_13245) hpt 2837539..2838069 (-) 531 WP_239837805.1 hypoxanthine phosphoribosyltransferase -
  J4N38_RS13330 (J4N38_13250) opaR 2838376..2838981 (+) 606 WP_239837806.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  J4N38_RS13335 (J4N38_13255) lpdA 2839111..2840541 (-) 1431 WP_239837807.1 dihydrolipoyl dehydrogenase -
  J4N38_RS13340 (J4N38_13260) aceF 2840797..2842695 (-) 1899 WP_252035350.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23257.44 Da        Isoelectric Point: 5.3049

>NTDB_id=548465 J4N38_RS13330 WP_239837806.1 2838376..2838981(+) (opaR) [Vibrio sp. SCSIO 43145]
MDSIAKRPRTRLSPQKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLRNLTSAMVDLIVNDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFVKAIERGEVCDEHDPA
DLATLFHGICYSLFVQANRTQDDESVNRLTQSYLDMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=548465 J4N38_RS13330 WP_239837806.1 2838376..2838981(+) (opaR) [Vibrio sp. SCSIO 43145]
ATGGATTCTATAGCTAAGAGACCGCGTACGCGTCTTTCACCACAAAAACGTAAGCAACAACTGATGGAAATCGCATTAGA
AGTGTTTGCTCGACGTGGTATTGGTCGCGGTGGTCACGCTGACATTGCAGAAATCGCCCAGGTTTCTGTAGCCACCGTGT
TTAACTACTTCCCAACCCGTGAAGATTTGGTTGATGATGTACTAAACTACGTGGTTCGTCAGTTCTCTAACTTCCTATCT
GATAATATCGACCTCGATATTCACGCGAAAGAAAACCTACGCAACCTAACTTCAGCGATGGTTGATCTGATTGTCAACGA
CTGTCACTGGTTGAAAGTTTGGTTTGAGTGGAGTGCTTCAACACGTGATGAAGTATGGCCCTTGTTCGTGACCACCAACC
GCACCAATCAACTGCTGGTTCAGAACATGTTTGTCAAAGCCATCGAGCGAGGTGAGGTGTGTGACGAACACGATCCTGCA
GATCTAGCAACACTGTTCCATGGTATTTGCTACTCATTGTTCGTACAGGCTAACCGTACTCAGGACGATGAGTCTGTGAA
TCGCCTGACACAAAGCTACCTAGATATGCTTTGCATCTACAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

84

99.502

0.836
  hapR Vibrio cholerae C6706

76.382

99.005

0.756
  hapR Vibrio cholerae strain A1552

76.382

99.005

0.756