Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   J4N38_RS10955 Genome accession   NZ_CP071857
Coordinates   2340393..2341787 (-) Length   464 a.a.
NCBI ID   WP_239838170.1    Uniprot ID   A0A9Q8UQ64
Organism   Vibrio sp. SCSIO 43145     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2335393..2346787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N38_RS10920 (J4N38_10850) moaE 2336092..2336544 (-) 453 WP_252036640.1 molybdopterin synthase catalytic subunit MoaE -
  J4N38_RS10925 (J4N38_10855) moaD 2336544..2336789 (-) 246 WP_239838175.1 molybdopterin synthase sulfur carrier subunit -
  J4N38_RS10930 (J4N38_10860) moaC 2336786..2337265 (-) 480 WP_252035144.1 cyclic pyranopterin monophosphate synthase MoaC -
  J4N38_RS10935 (J4N38_10865) moaB 2337277..2337789 (-) 513 WP_239865573.1 molybdenum cofactor biosynthesis protein B -
  J4N38_RS10940 (J4N38_10870) moaA 2337878..2338867 (-) 990 WP_239838172.1 GTP 3',8-cyclase MoaA -
  J4N38_RS10945 (J4N38_10875) yvcK 2339172..2340059 (+) 888 WP_252035145.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  J4N38_RS10950 (J4N38_10880) luxU 2340045..2340389 (-) 345 WP_252036641.1 quorum-sensing phosphorelay protein LuxU -
  J4N38_RS10955 (J4N38_10885) luxO 2340393..2341787 (-) 1395 WP_239838170.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  J4N38_RS10960 (J4N38_10890) uvrB 2342046..2344076 (-) 2031 WP_239838169.1 excinuclease ABC subunit UvrB -
  J4N38_RS10970 (J4N38_10900) - 2345104..2345244 (+) 141 WP_252040070.1 hypothetical protein -
  J4N38_RS22835 - 2345364..2345708 (-) 345 WP_353505741.1 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51736.03 Da        Isoelectric Point: 5.8826

>NTDB_id=548463 J4N38_RS10955 WP_239838170.1 2340393..2341787(-) (luxO) [Vibrio sp. SCSIO 43145]
MQHNTQTQKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDVLHAVKQKM
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSHTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKDFVRLAPEVVSRFSQYEWPGNVRQLQNVLRNVVVLNNGENISLDMLPPPLNQPVENQI
RVDLQDKDSFSVHDIFPLWLTEKKAIEQAIQACEGNIPKAAGYLDVSPSTIYRKLQNWNTKETQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=548463 J4N38_RS10955 WP_239838170.1 2340393..2341787(-) (luxO) [Vibrio sp. SCSIO 43145]
ATGCAACACAATACGCAAACACAAAAGTCTAAATACCTTTTGATGGTGGAAGATACCGCATCGGTTGCGGCGTTGTATCG
ATCTTATCTCACCCCATTGGGTATCGACATCAATATTGTTGGTACTGGGCGCGATGCTATTGAAAGCCTCAACTTTCGCA
CTCCTGATTTAATTTTGTTGGATCTTCGCCTTCCCGACATGACGGGGATGGATGTTTTACATGCTGTAAAGCAGAAAATG
CCGGATGTGCCGGTGATCTTCATGACGGCTCATGGATCGATTGATACTGCTGTAGAAGCCATGCGTCATGGTGCGCAAGA
CTTCTTGATTAAGCCATGTGAAGCAGATCGTCTTCGTGTCACGGTGAACAATGCTATTCGTAAAGCAACCAAGCTTAAAA
ATGAAGCAGATAATCCCGGCAACCAGAATTATCAGGGGTTTATAGGCAGTAGCCACACTATGCAGGCTGTCTATCGTACC
ATTGACTCGGCGGCATCCAGTAAAGCCAGTATTTTTATCACTGGGGAAAGCGGTACCGGTAAAGAGGTCTGTGCTGAGGC
TATTCACGCCGCGAGTAAACGTGGTGATAAGCCGTTTATAGCGATCAACTGTGCGGCTATCCCCAAAGATCTGATTGAAA
GTGAACTGTTTGGCCATGTGAAGGGAGCTTTCACCGGCGCAGCCACTGATCGACAAGGTGCGGCTGAGTTGGCTGATGGA
GGCACGCTGTTCCTTGACGAGCTGTGTGAGATGGATCTGGATCTGCAAACTAAGCTACTACGCTTTATTCAGACGGGTAC
CTTCCAGAAAGTCGGCTCTTCGAAAATGAAAAGCGTCGATGTACGTTTCGTTTGTGCAACCAACCGAGACCCTTGGAAAG
AGGTGCAGGAAGGCCGCTTCCGTGAAGATTTGTATTATCGTTTATACGTGATTCCATTACATCTACCCCCTTTGAGGGAA
CGTGGCGATGATGTCATAGAAATTGCTTATTCTCTGCTAGGCTTTATGTCTAAAGAGGAAGGAAAAGACTTTGTCCGATT
AGCACCAGAAGTGGTGAGTCGATTCTCTCAATATGAGTGGCCTGGTAATGTTCGCCAGTTGCAGAATGTTCTGAGAAATG
TAGTCGTGCTCAATAATGGCGAAAATATCTCCTTGGATATGCTGCCGCCACCGTTGAATCAACCTGTGGAAAATCAGATT
AGGGTTGATCTGCAAGACAAGGACAGCTTTTCTGTGCATGACATTTTCCCTCTGTGGTTAACAGAGAAGAAAGCTATCGA
GCAAGCGATTCAGGCGTGCGAAGGAAATATCCCTAAAGCCGCAGGTTATTTGGATGTGAGTCCATCGACTATCTATCGCA
AGCTACAAAACTGGAATACAAAGGAAACACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.393

96.552

0.853
  pilR Pseudomonas aeruginosa PAK

38.085

96.767

0.369