Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   J4N37_RS17230 Genome accession   NZ_CP071856
Coordinates   232887..234932 (-) Length   681 a.a.
NCBI ID   WP_252043319.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43153     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 227887..239932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS17220 (J4N37_17080) ylqF 230418..231362 (+) 945 WP_010452164.1 ribosome biogenesis GTPase YlqF -
  J4N37_RS17225 (J4N37_17085) cqsA 231659..232840 (+) 1182 WP_252042893.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  J4N37_RS17230 (J4N37_17090) cqsS 232887..234932 (-) 2046 WP_252043319.1 response regulator Regulator
  J4N37_RS17235 (J4N37_17095) - 235176..235724 (-) 549 WP_252042894.1 GNAT family N-acetyltransferase -
  J4N37_RS17240 (J4N37_17100) - 236016..237140 (+) 1125 WP_252042896.1 fatty acid desaturase -
  J4N37_RS17245 (J4N37_17105) dcuC 237530..238897 (+) 1368 WP_252042897.1 anaerobic C4-dicarboxylate transporter DcuC -
  J4N37_RS17250 (J4N37_17110) - 239126..239716 (+) 591 WP_010452175.1 LemA family protein -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78407.32 Da        Isoelectric Point: 5.4063

>NTDB_id=548441 J4N37_RS17230 WP_252043319.1 232887..234932(-) (cqsS) [Vibrio sp. SCSIO 43153]
MDALRKVYQYAEPNLTLVGWMGFVGFPTYFIVWEYLFPQPYENLPLRLFCSLLFLGIIVRNKLSSRLKANMHWYYQFAIT
LCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHITRVMFIQTFVGVFLATFFAWASKGFHLHITMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSIAKSFGAGIAHEMRNPLSGLCSSIDVMQSIIPDPKQEKKDTYQLSIEDIELLREISDDAMK
MIQSGNETIDLLLTSIDENRVSRATFKKHNVQQVIENAIESFSYKRASDRAAISIDIRSGFDFLGSDTLLKYVVYNLFKN
AFHHRSSEDFHIHVTVESNDNANRIVVTDNGAGISVDALENIFRDFYTTGKSGNYGLGLPFCKKVMRSFGGDIKCVSELG
EWSQFTLTFPLLNSPVVEEIKDELIKLKSVVLISNQKILVSKATELSRHMGFQFDVINTLDVFNKKEYEFEYDVIFVDLE
SIDIRGTQLDRIESLLSFTEGRIVYLFQQHSPSRPIKAGYFPIWMETQAWLLNTYTTIERLLFDVDYESAAAPIREIEHD
NRRTIMVVDDNESLRKFTALLLEKQGFDVIQKEDGEQALEALSSESIDLILMDIEMPVMDGIETSRKIRSSKCAYSTIPI
IAHTGDSSPVTLEKIESSGMSDFIVKPADKARLFDKIAHWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=548441 J4N37_RS17230 WP_252043319.1 232887..234932(-) (cqsS) [Vibrio sp. SCSIO 43153]
ATGGATGCATTGCGTAAGGTATACCAGTATGCAGAGCCGAATCTGACGTTAGTTGGTTGGATGGGGTTTGTTGGCTTTCC
GACGTACTTTATTGTATGGGAGTACTTGTTCCCACAGCCATACGAAAACTTACCACTGCGCTTGTTTTGCTCACTTCTAT
TTCTCGGGATTATCGTTAGAAACAAATTAAGCTCTCGCCTAAAAGCGAACATGCATTGGTACTATCAGTTTGCTATAACC
CTTTGCTTACCGTTTTTCTTTTTCTATATGTTGCTGATGAATGATTGGTCCAATGTTTGGGTTATGTCATTTATGTCGGC
GATTTTTTTGCATATCCTTTTGGTCCATATCACTCGAGTGATGTTTATCCAAACGTTCGTCGGGGTTTTTCTGGCTACGT
TTTTTGCGTGGGCCTCGAAAGGGTTTCACCTGCATATAACGATGGATTGGACACATGTTCCGATCTTTTTGTTTATCTAT
CTTTTCGGCAATCTATTTTATTTTAGAAACCAAGTTGAACATGAAGCGAAAGTATCCATAGCTAAGTCATTTGGAGCGGG
GATTGCTCACGAAATGCGTAACCCGTTAAGCGGGCTTTGCTCTTCCATCGATGTGATGCAGTCAATTATTCCAGATCCAA
AACAAGAGAAAAAAGACACTTATCAACTGTCCATTGAAGATATTGAGTTATTGCGCGAGATTAGCGATGACGCAATGAAA
ATGATTCAGTCAGGTAATGAGACTATCGATTTGTTGCTGACATCAATAGACGAGAATAGAGTTTCTCGCGCTACCTTTAA
AAAGCATAATGTCCAACAAGTGATTGAAAATGCAATTGAAAGTTTCAGCTACAAGCGAGCGTCAGATAGGGCGGCAATAT
CAATCGATATCCGGAGTGGCTTTGACTTTTTAGGTAGTGACACTTTGTTAAAGTACGTAGTTTACAACCTATTTAAAAAT
GCATTTCATCATCGCAGTTCAGAAGACTTCCATATTCACGTGACCGTTGAGTCGAACGATAATGCCAACCGTATTGTTGT
TACTGATAATGGGGCTGGGATCTCGGTTGATGCTCTTGAAAACATTTTTAGGGACTTCTATACAACCGGTAAATCTGGAA
ATTATGGGCTTGGCTTACCATTTTGTAAGAAGGTCATGCGCTCCTTCGGTGGTGATATTAAATGTGTCTCTGAGCTTGGA
GAGTGGTCTCAATTTACGCTGACATTTCCTCTTCTTAATTCGCCAGTAGTAGAAGAAATAAAGGATGAGTTAATCAAGTT
GAAATCAGTAGTGTTGATATCTAACCAAAAGATCCTGGTGAGTAAGGCGACAGAATTAAGTCGTCATATGGGGTTTCAGT
TTGATGTTATTAACACGTTGGATGTATTCAATAAGAAAGAGTACGAGTTCGAGTATGACGTGATTTTTGTCGACCTTGAA
AGTATTGATATCCGCGGAACACAGCTGGATAGAATTGAATCACTTCTATCATTTACAGAAGGGCGAATTGTTTACTTATT
CCAGCAGCATTCACCATCTCGTCCAATTAAGGCTGGTTATTTCCCTATCTGGATGGAGACTCAAGCTTGGTTACTAAACA
CTTACACGACTATCGAACGGTTATTGTTTGATGTTGATTATGAGTCTGCTGCGGCCCCTATTAGAGAAATAGAGCACGAT
AACAGAAGGACTATCATGGTCGTTGACGATAACGAATCGCTACGAAAGTTCACCGCGTTGTTGTTAGAAAAGCAGGGGTT
TGATGTTATTCAGAAAGAAGATGGCGAACAAGCACTGGAAGCTTTGAGTTCTGAAAGTATTGATTTAATTTTAATGGATA
TTGAAATGCCAGTGATGGATGGGATTGAAACATCGCGCAAGATTCGTAGTTCGAAGTGTGCTTACTCGACGATTCCAATT
ATTGCACATACAGGTGATAGCTCACCGGTGACACTTGAAAAGATAGAGTCATCAGGCATGTCTGATTTTATCGTCAAGCC
AGCTGATAAAGCTCGATTGTTTGACAAAATTGCTCATTGGATATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-411)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.905

100

0.492