Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   J4N37_RS17225 Genome accession   NZ_CP071856
Coordinates   231659..232840 (+) Length   393 a.a.
NCBI ID   WP_252042893.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43153     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 226659..237840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS17220 (J4N37_17080) ylqF 230418..231362 (+) 945 WP_010452164.1 ribosome biogenesis GTPase YlqF -
  J4N37_RS17225 (J4N37_17085) cqsA 231659..232840 (+) 1182 WP_252042893.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  J4N37_RS17230 (J4N37_17090) cqsS 232887..234932 (-) 2046 WP_252043319.1 response regulator Regulator
  J4N37_RS17235 (J4N37_17095) - 235176..235724 (-) 549 WP_252042894.1 GNAT family N-acetyltransferase -
  J4N37_RS17240 (J4N37_17100) - 236016..237140 (+) 1125 WP_252042896.1 fatty acid desaturase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43407.46 Da        Isoelectric Point: 6.1850

>NTDB_id=548440 J4N37_RS17225 WP_252042893.1 231659..232840(+) (cqsA) [Vibrio sp. SCSIO 43153]
MSDKAKIKPLPSFVEERLDFYIHDLIAKNQNKKHLVLGKRPTDSSVVMQSNDYLSLSSNRQIQSDHQHAISEDDDNVVMS
AIFLQDEQSKPKFEQQLADFTGMESCLLSQSGWAANVGLLQTICAPQTPVYIDFFAHMSLWEGARIAGAEIHPFMHNNMN
HLQKQIKRHGEGIIIVDSIYSTIGTIAPLETIYEIASESNCALIVDESHSLGTHGPAGAGLVKALGLTSKVDFITVSLAK
TFAYRAGAILGPQKLSQSLPFVAYPAIFSSTILPQEVVRLESTLNVIKSADDKRKALFARSSSLRTGLKQIGFQIRSESQ
IIALECGSEENTEKVRDFLEEHDVFGAVFCRPATGKNKNIIRFSINADITTAQVEHVLAVCEKAFNNPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=548440 J4N37_RS17225 WP_252042893.1 231659..232840(+) (cqsA) [Vibrio sp. SCSIO 43153]
ATGAGTGACAAAGCTAAAATAAAACCACTTCCTTCCTTTGTTGAGGAGCGTCTGGACTTTTACATCCATGATTTAATAGC
AAAAAATCAAAACAAAAAACACCTTGTACTAGGAAAACGCCCAACGGATAGTTCAGTGGTGATGCAAAGTAATGACTACC
TATCCTTGTCAAGCAACCGACAGATCCAATCTGACCACCAGCACGCTATATCAGAAGATGATGATAACGTCGTAATGTCA
GCAATTTTCTTACAAGATGAACAATCTAAGCCTAAATTTGAACAGCAACTTGCTGATTTTACGGGAATGGAAAGTTGTTT
ATTGTCCCAATCAGGTTGGGCTGCAAATGTTGGCTTATTACAAACGATATGTGCACCACAAACTCCTGTCTATATCGACT
TCTTCGCCCACATGTCATTGTGGGAGGGAGCTCGTATCGCCGGAGCTGAAATTCACCCGTTCATGCACAACAACATGAAC
CACCTCCAAAAGCAAATCAAGCGACACGGTGAGGGTATTATTATCGTTGATTCTATTTACAGCACTATTGGAACCATAGC
ACCCCTCGAAACAATCTACGAAATTGCTTCTGAATCAAACTGCGCTCTTATCGTCGATGAGTCACATTCATTAGGTACAC
ATGGCCCTGCAGGAGCCGGGCTAGTAAAAGCCCTTGGTTTAACGAGTAAAGTAGATTTCATTACGGTTAGCTTAGCCAAA
ACATTTGCTTATCGGGCAGGCGCAATCTTGGGCCCGCAAAAGCTATCTCAATCGCTCCCGTTTGTTGCGTATCCTGCTAT
TTTTAGCTCGACAATTCTTCCTCAAGAAGTTGTCCGCTTGGAATCTACGCTGAACGTTATTAAAAGTGCGGATGACAAAC
GAAAAGCTTTGTTTGCACGTTCATCATCTTTAAGAACCGGACTAAAGCAGATTGGATTTCAGATTCGTAGTGAATCACAG
ATCATTGCTTTGGAATGTGGAAGCGAAGAGAACACGGAAAAAGTGAGAGATTTTCTAGAGGAACATGATGTATTTGGAGC
CGTTTTCTGTCGACCAGCTACAGGAAAAAACAAGAATATCATTCGTTTTTCTATCAACGCTGATATCACAACAGCTCAAG
TCGAACACGTATTGGCCGTGTGCGAAAAGGCTTTCAATAACCCTGAACTAGAATTTGTCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(48-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.031

98.219

0.57