Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   J4N37_RS13085 Genome accession   NZ_CP071855
Coordinates   2757978..2758592 (+) Length   204 a.a.
NCBI ID   WP_010450170.1    Uniprot ID   A0A2K7SNB8
Organism   Vibrio sp. SCSIO 43153     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2752978..2763592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS13065 (J4N37_12935) - 2753259..2754176 (-) 918 WP_252041138.1 ABC transporter ATP-binding protein -
  J4N37_RS13070 (J4N37_12940) - 2754417..2756087 (-) 1671 WP_252041140.1 SulP family inorganic anion transporter -
  J4N37_RS13075 (J4N37_12945) can 2756371..2757039 (+) 669 WP_010450166.1 carbonate dehydratase -
  J4N37_RS13080 (J4N37_12950) hpt 2757128..2757658 (-) 531 WP_010450168.1 hypoxanthine phosphoribosyltransferase -
  J4N37_RS13085 (J4N37_12955) opaR 2757978..2758592 (+) 615 WP_010450170.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  J4N37_RS13090 (J4N37_12960) - 2758713..2759726 (+) 1014 WP_252041141.1 IS110 family transposase -
  J4N37_RS13095 (J4N37_12965) lpdA 2760176..2761606 (-) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23561.80 Da        Isoelectric Point: 6.0765

>NTDB_id=548415 J4N37_RS13085 WP_010450170.1 2757978..2758592(+) (opaR) [Vibrio sp. SCSIO 43153]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCSEHEPE
HLANLFHGICYSLFVQANRSKSESELASLVNSYLDMLCIYNRDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=548415 J4N37_RS13085 WP_010450170.1 2757978..2758592(+) (opaR) [Vibrio sp. SCSIO 43153]
ATGGACTCAATTGCAAAGAGGCCTCGTACTAGGCTTTCACCTCTTAAACGTAAACAACAACTGATGGAAATCGCTCTAGA
AGTATTTGCTCGTCGCGGCATTGGCCGTGGTGGTCATGCGGATATTGCCGAGATCGCTCAAGTTTCTGTTGCGACTGTAT
TTAACTACTTCCCGACTCGCGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTTCGTCAGTTCTCTAACTTTTTATCT
GATAATATTGACTTAGACATTCATGCTCGTGAGAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCACTGGCTGAAAGTATGGTTTGAGTGGAGTGCGTCAACACGTGATGAAGTATGGCCACTTTTTGTAACTACAAACC
GTACCAACCAACTGCTAGTGCAAAACATGTTCATTAAGGCCATCGAACGTGGTGAAGTATGTTCTGAGCATGAACCAGAG
CACTTGGCAAACCTCTTCCATGGCATCTGTTACTCTTTATTTGTGCAAGCAAATCGTTCTAAGAGTGAATCTGAACTAGC
TAGCTTAGTTAATTCTTACCTAGATATGCTTTGCATCTACAACCGCGACCATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K7SNB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

93.627

100

0.936
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696