Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   J4N37_RS11025 Genome accession   NZ_CP071855
Coordinates   2292746..2294107 (-) Length   453 a.a.
NCBI ID   WP_252042137.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43153     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2287746..2299107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS10990 (J4N37_10855) moaE 2288346..2288801 (-) 456 WP_010449369.1 molybdopterin synthase catalytic subunit MoaE -
  J4N37_RS10995 (J4N37_10860) moaD 2288803..2289060 (-) 258 WP_010449371.1 molybdopterin synthase sulfur carrier subunit -
  J4N37_RS11000 (J4N37_10865) moaC 2289060..2289536 (-) 477 WP_005439664.1 cyclic pyranopterin monophosphate synthase MoaC -
  J4N37_RS11005 (J4N37_10870) moaB 2289563..2290075 (-) 513 WP_252040926.1 molybdenum cofactor biosynthesis protein B -
  J4N37_RS11010 (J4N37_10875) moaA 2290176..2291165 (-) 990 WP_038885128.1 GTP 3',8-cyclase MoaA -
  J4N37_RS11015 (J4N37_10880) yvcK 2291468..2292358 (+) 891 WP_252040927.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  J4N37_RS11020 (J4N37_10885) luxU 2292405..2292749 (-) 345 WP_252040928.1 quorum-sensing phosphorelay protein LuxU -
  J4N37_RS11025 (J4N37_10890) luxO 2292746..2294107 (-) 1362 WP_252042137.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  J4N37_RS11030 (J4N37_10895) uvrB 2294503..2296533 (-) 2031 WP_010449384.1 excinuclease ABC subunit UvrB -
  J4N37_RS11040 (J4N37_10905) rsxA 2297513..2298091 (+) 579 WP_005425202.1 electron transport complex subunit RsxA -
  J4N37_RS11045 (J4N37_10910) rsxB 2298095..2298688 (+) 594 WP_005439677.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50310.39 Da        Isoelectric Point: 5.1393

>NTDB_id=548413 J4N37_RS11025 WP_252042137.1 2292746..2294107(-) (luxO) [Vibrio sp. SCSIO 43153]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKESNPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLG
YMSHEEGKSFVRFSPEVIERFNDYEWPGNVRQLQNVLRNIVVLNSGKEISLDMLPPPLNAPMIKTPMPRAVEIESFSASD
IIPLWMTEKSAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNQTEEQKKA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=548413 J4N37_RS11025 WP_252042137.1 2292746..2294107(-) (luxO) [Vibrio sp. SCSIO 43153]
ATGGTCGAAGACACCGCATCCGTCGCAGCGTTATATCGCTCCTATCTAACACCTCTTGGTATTGATATTAATATCGTTGG
CACTGGGCGTGATGCTATTGACAGCTTAAAGCACCGAATCCCAGATTTAATTCTGCTGGATCTGCGTCTACCCGATATGA
CAGGTATGGATGTTCTCCATGCGGTTAAAGAGAGTAACCCAGACGTCCCGATCATTTTTATGACGGCACACGGCTCTATT
GATACGGCCGTAGAGGCAATGCGTCATGGTTCCCAAGATTTTTTAATTAAGCCCTGCGAAGCCGACCGATTGCGTGTCAC
GGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGAATGAAGCTGACAACCCTGGCAATCAAAATTATCAAGGCTTTA
TTGGCAGTAGCCAAACCATGCAGCAGGTTTACCGCACTATTGATTCTGCTGCGAGCAGTAAGGCGAGCATTTTCATTACT
GGTGAAAGTGGCACGGGTAAAGAAGTGTGTGCGGAGGCGATTCACGCAGCAAGTAAGCGTGGAGATAAGCCGTTTATCGC
CATCAACTGTGCAGCAATTCCGAAAGACCTTATTGAAAGTGAACTGTTTGGTCACGTAAAAGGTGCTTTCACCGGTGCGG
CTAATGATCGACAAGGTGCGGCAGAACTGGCTGATGGCGGCACGCTGTTCCTTGATGAGCTGTGTGAAATGGACTTGGAT
CTTCAAACTAAGTTATTGCGTTTTATTCAAACGGGTACGTTCCAAAAGGTCGGTTCTTCTAAAATGAAGAGCGTAGACGT
GCGCTTTGTGTGTGCGACCAACCGCGACCCTTGGAAAGAAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTACTACCGTT
TGTACGTGATTCCTTTACACCTTCCACCGTTGCGTGAGCGCGGCGAAGACGTGATTGAAATTGCTTATTCATTGCTTGGC
TACATGTCGCATGAAGAAGGAAAGAGCTTTGTACGTTTCTCTCCAGAGGTAATAGAGCGATTCAATGATTATGAATGGCC
TGGAAACGTTCGCCAATTGCAAAACGTGTTGCGTAACATTGTTGTCTTGAACAGCGGTAAAGAGATTTCTTTAGACATGT
TACCGCCACCATTGAACGCGCCAATGATTAAGACACCAATGCCAAGAGCCGTTGAAATCGAGAGTTTTTCTGCTTCTGAT
ATTATACCGTTGTGGATGACAGAGAAGTCCGCCATTGAACAGGCTATAGAGGCTTGCGATGGCAATATACCGAGAGCTGC
TGGGTATTTGGATGTAAGCCCTTCAACGATTTATCGTAAGCTCCAAACTTGGAATCAAACCGAAGAGCAGAAAAAGGCAT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.277

98.896

0.863
  pilR Pseudomonas aeruginosa PAK

37.303

98.234

0.366