Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LSP18_RS31255 Genome accession   NZ_CP089063
Coordinates   6694118..6695143 (-) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain UNC_PaerCF37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6689118..6700143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP18_RS31230 (LSP18_31495) aroE 6689320..6690144 (-) 825 WP_003111201.1 shikimate dehydrogenase -
  LSP18_RS31235 (LSP18_31500) hemF 6690202..6691119 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  LSP18_RS31240 (LSP18_31505) - 6691310..6692287 (+) 978 WP_003111202.1 NADPH:quinone reductase -
  LSP18_RS31245 (LSP18_31510) - 6692297..6692854 (-) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  LSP18_RS31250 (LSP18_31515) dprA 6692895..6693983 (-) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  LSP18_RS31255 (LSP18_31520) tsaP 6694118..6695143 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LSP18_RS31260 (LSP18_31525) def 6695282..6695788 (+) 507 WP_003107059.1 peptide deformylase -
  LSP18_RS31265 (LSP18_31530) fmt 6695843..6696787 (+) 945 WP_057390676.1 methionyl-tRNA formyltransferase -
  LSP18_RS31270 (LSP18_31535) rsmB 6696784..6698088 (+) 1305 WP_023092224.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LSP18_RS31275 (LSP18_31540) trkA 6698115..6699488 (+) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  LSP18_RS31280 (LSP18_31545) - 6699637..6699954 (+) 318 WP_003120685.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=548408 LSP18_RS31255 WP_003097294.1 6694118..6695143(-) (tsaP) [Pseudomonas aeruginosa strain UNC_PaerCF37]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=548408 LSP18_RS31255 WP_003097294.1 6694118..6695143(-) (tsaP) [Pseudomonas aeruginosa strain UNC_PaerCF37]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393