Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SYN7502_RS11290 Genome accession   NC_019702
Coordinates   2290397..2290771 (-) Length   124 a.a.
NCBI ID   WP_015168955.1    Uniprot ID   -
Organism   Synechococcus sp. PCC 7502     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2285397..2295771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYN7502_RS11265 (Syn7502_02292) - 2285836..2286747 (-) 912 WP_246828908.1 Arm DNA-binding domain-containing protein -
  SYN7502_RS11275 (Syn7502_02294) - 2287064..2288077 (-) 1014 WP_015168952.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  SYN7502_RS11280 (Syn7502_02295) - 2288267..2289352 (+) 1086 WP_015168953.1 hypothetical protein -
  SYN7502_RS11285 (Syn7502_02296) - 2289421..2290392 (+) 972 WP_015168954.1 aldo/keto reductase -
  SYN7502_RS11290 (Syn7502_02297) pilH 2290397..2290771 (-) 375 WP_015168955.1 response regulator transcription factor Machinery gene
  SYN7502_RS11295 (Syn7502_02298) - 2291176..2291895 (-) 720 WP_015168956.1 SDR family oxidoreductase -
  SYN7502_RS11300 - 2291947..2292348 (+) 402 WP_041429414.1 hypothetical protein -
  SYN7502_RS11305 (Syn7502_02299) - 2292445..2293134 (-) 690 WP_015168957.1 NUDIX domain-containing protein -
  SYN7502_RS11310 (Syn7502_02300) - 2293225..2294040 (+) 816 WP_015168958.1 protein phosphatase 2C domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 14185.56 Da        Isoelectric Point: 5.8874

>NTDB_id=54834 SYN7502_RS11290 WP_015168955.1 2290397..2290771(-) (pilH) [Synechococcus sp. PCC 7502]
MTTVLVVDDSPTVRELVSEHLRQQNIAVVEAFDGLDATEKIKISVPDLVITDVVMPRMNGYELCRWIKNNVKNKNVPVVM
CTTKSEEFDKYWGMKQGADAYITKPYNPPELIDIVKRLIRMMAN

Nucleotide


Download         Length: 375 bp        

>NTDB_id=54834 SYN7502_RS11290 WP_015168955.1 2290397..2290771(-) (pilH) [Synechococcus sp. PCC 7502]
ATGACCACAGTTTTAGTCGTTGATGATAGTCCAACAGTACGGGAGCTTGTTTCAGAACATCTGAGGCAGCAAAATATTGC
CGTAGTTGAGGCTTTCGATGGACTAGATGCCACTGAAAAAATTAAGATTAGCGTCCCTGACTTAGTAATTACGGATGTAG
TTATGCCTCGGATGAATGGCTATGAGCTATGTCGTTGGATTAAAAATAACGTTAAGAACAAAAATGTTCCTGTAGTTATG
TGTACAACTAAGAGTGAAGAATTTGACAAGTACTGGGGGATGAAGCAGGGGGCAGATGCCTACATTACTAAGCCCTATAA
TCCACCCGAACTGATAGACATTGTCAAGCGTTTAATTAGAATGATGGCTAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

55

96.774

0.532
  pilL-C Synechocystis sp. PCC 6803

38.333

96.774

0.371

Multiple sequence alignment