Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   J4N45_RS12350 Genome accession   NZ_CP071850
Coordinates   2554448..2555842 (+) Length   464 a.a.
NCBI ID   WP_252011616.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43140     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2549448..2560842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS12330 (J4N45_12345) rsxB 2550342..2550923 (-) 582 WP_128648622.1 electron transport complex subunit RsxB -
  J4N45_RS12335 (J4N45_12350) rsxA 2550923..2551504 (-) 582 WP_042476631.1 electron transport complex subunit RsxA -
  J4N45_RS12345 (J4N45_12360) uvrB 2552284..2554314 (+) 2031 WP_252011615.1 excinuclease ABC subunit UvrB -
  J4N45_RS12350 (J4N45_12365) luxO 2554448..2555842 (+) 1395 WP_252011616.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  J4N45_RS12355 (J4N45_12370) - 2555839..2556189 (+) 351 WP_252011617.1 Hpt domain-containing protein -
  J4N45_RS12360 (J4N45_12375) - 2556234..2557121 (-) 888 WP_252011618.1 YvcK family protein -
  J4N45_RS12365 (J4N45_12380) moaA 2557430..2558419 (+) 990 WP_252011619.1 GTP 3',8-cyclase MoaA -
  J4N45_RS12370 (J4N45_12385) moaB 2558467..2558979 (+) 513 WP_042476651.1 molybdenum cofactor biosynthesis protein B -
  J4N45_RS12375 (J4N45_12390) moaC 2558995..2559474 (+) 480 WP_128648620.1 cyclic pyranopterin monophosphate synthase MoaC -
  J4N45_RS12380 (J4N45_12395) moaD 2559471..2559716 (+) 246 WP_252011620.1 molybdopterin synthase sulfur carrier subunit -
  J4N45_RS12385 (J4N45_12400) moaE 2559718..2560173 (+) 456 WP_252011621.1 molybdopterin synthase catalytic subunit MoaE -
  J4N45_RS12390 (J4N45_12405) - 2560271..2560609 (-) 339 WP_252011622.1 HopJ type III effector protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51625.00 Da        Isoelectric Point: 5.1275

>NTDB_id=548332 J4N45_RS12350 WP_252011616.1 2554448..2555842(+) (luxO) [Vibrio sp. SCSIO 43140]
MQPLIDEPKSRYLLMVEDTASVAALYRSYLSPLGIDINIVGNGRDAIQSLEHRTPDLILLDLRLPDMTGMDVLDAVKKFN
PDVPIIFMTAHGSIDIAVDAMQHGAQDFLIKPCEADRLRVTVTNAIRKASKLRDEINDTGSPSYQGFIGSSQPMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAAVDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSRMKKVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRD
REEDVIEIAYSLLGFMSHEEGKSFVRFSQDVIERFIQYEWPGNVRQLQNVLRNVVVLNHGKEITLDMLPPPLNIPVVVSK
PAATITSSFGPQDIQPLWQTERRTIEQAIEACDGNIPQAAKYLDVSPSTIYRKIQAWNASENNV

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=548332 J4N45_RS12350 WP_252011616.1 2554448..2555842(+) (luxO) [Vibrio sp. SCSIO 43140]
ATGCAACCTTTAATCGACGAGCCGAAGTCTCGCTACCTATTAATGGTAGAAGATACTGCCTCCGTTGCTGCGTTGTATCG
CTCGTACCTTTCTCCTTTGGGGATCGATATCAATATCGTTGGCAATGGCCGCGACGCGATTCAAAGCTTAGAGCATCGGA
CGCCTGATCTAATACTTCTCGACCTGCGTCTTCCCGACATGACAGGTATGGATGTGTTGGACGCAGTAAAAAAATTCAAT
CCCGATGTGCCGATCATCTTTATGACGGCGCACGGTTCTATCGATATTGCGGTAGACGCGATGCAACACGGGGCGCAAGA
CTTCTTGATCAAACCCTGTGAGGCAGACCGTCTGCGCGTCACGGTCACCAACGCCATCCGCAAAGCCTCTAAGCTGCGTG
ATGAGATCAATGATACCGGCAGCCCGAGTTATCAAGGTTTTATCGGTAGTAGCCAACCAATGCAAGCCGTTTACCGTACC
ATCGATTCTGCCGCATCCAGTAAAGCCAGTATTTTTATCACAGGCGAAAGTGGTACCGGTAAAGAGGTATGCGCAGAAGC
CATTCACGCGGCGAGTAAGCGTGGTGATAAGCCGTTCATCGCCATTAACTGTGCTGCAATTCCTAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTGAAAGGCGCTTTTACCGGCGCGGCGGTAGACAGACAAGGTGCGGCAGAGCTCGCCGATGGA
GGAACCCTATTCCTCGATGAGCTGTGTGAGATGGATCTTGACCTACAAACCAAGTTATTGCGATTTATCCAAACAGGTAC
GTTCCAGAAGGTTGGTTCTTCTCGAATGAAGAAAGTGGATGTGCGCTTCGTGTGTGCAACCAACCGAGATCCCTGGAAAG
AGGTACAAGAAGGGCGCTTTAGGGAAGATTTGTACTATCGCTTGTACGTTATCCCACTGCACTTGCCACCACTTCGCGAC
CGTGAAGAGGATGTAATCGAGATTGCCTATTCTCTTTTGGGCTTTATGTCCCATGAAGAAGGCAAAAGCTTCGTTCGTTT
TTCGCAAGACGTGATTGAGCGATTTATTCAATATGAATGGCCAGGTAACGTACGTCAGTTGCAGAATGTGCTTCGAAATG
TGGTGGTGCTGAACCATGGCAAGGAAATTACCTTGGACATGCTACCTCCACCATTGAATATACCCGTCGTCGTAAGTAAG
CCCGCAGCTACTATTACGTCGTCATTTGGTCCTCAAGATATACAGCCGTTGTGGCAAACTGAGCGCCGTACCATCGAGCA
GGCGATTGAAGCGTGTGATGGAAATATTCCTCAAGCTGCTAAGTACTTAGATGTTAGTCCATCGACTATCTACAGAAAAA
TCCAAGCATGGAATGCGAGTGAGAACAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

83.445

96.336

0.804
  pilR Pseudomonas aeruginosa PAK

37.978

95.905

0.364