Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   J4N45_RS02225 Genome accession   NZ_CP071850
Coordinates   421413..422033 (-) Length   206 a.a.
NCBI ID   WP_042475876.1    Uniprot ID   A0A090SPK7
Organism   Vibrio sp. SCSIO 43140     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 416413..427033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS02215 (J4N45_02210) aceF 417717..419630 (+) 1914 WP_252013354.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  J4N45_RS02220 (J4N45_02215) lpdA 419909..421336 (+) 1428 WP_042475873.1 dihydrolipoyl dehydrogenase -
  J4N45_RS02225 (J4N45_02220) opaR 421413..422033 (-) 621 WP_042475876.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  J4N45_RS02230 (J4N45_02225) hpt 422559..423089 (+) 531 WP_042475879.1 hypoxanthine phosphoribosyltransferase -
  J4N45_RS02235 (J4N45_02230) can 423168..423827 (-) 660 WP_128647944.1 carbonate dehydratase -
  J4N45_RS02240 (J4N45_02235) - 424061..425707 (+) 1647 WP_252013356.1 SulP family inorganic anion transporter -
  J4N45_RS02245 (J4N45_02240) - 425895..426815 (+) 921 WP_042475882.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23596.85 Da        Isoelectric Point: 5.5347

>NTDB_id=548318 J4N45_RS02225 WP_042475876.1 421413..422033(-) (opaR) [Vibrio sp. SCSIO 43140]
MDSIVKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVCQYSNFLS
NTIDLDVNIKDNLTNILDSVVDMVIEDCHWNKVWFEWSTSTRDEVWPLFVSSNKTSQALVENMFIRAIERGEVCPHHNPK
HLTSLFHGLCYSLFVEAMRNNDSDAVKSLTDCYMDMVCIYNNGDAH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=548318 J4N45_RS02225 WP_042475876.1 421413..422033(-) (opaR) [Vibrio sp. SCSIO 43140]
ATGGACTCAATCGTAAAAAGACCTAGGACACGTCTGTCTCCGCAAAAGCGAAAGCTTCAGCTCATGGAGATAGCATTAGA
AGTATTTGCAAAGCGCGGTATTGGGCGCGGCGGACACGCTGACATCGCAGAGATCGCTCAGGTATCTGTCGCTACAGTGT
TTAACTACTTCCCTACTCGTGAAGACTTAGTGGACGAAGTACTTAACCACGTCGTATGTCAATATTCCAACTTCCTCTCG
AATACCATCGATCTCGATGTCAATATCAAGGACAACCTGACGAATATCCTAGATAGCGTCGTGGATATGGTGATCGAGGA
TTGTCACTGGAATAAAGTGTGGTTTGAATGGAGCACGTCTACTCGCGATGAGGTATGGCCGTTGTTTGTAAGCTCAAACA
AGACTAGCCAAGCTCTAGTAGAAAATATGTTTATCAGAGCTATCGAACGTGGTGAAGTCTGCCCGCATCATAACCCTAAA
CACCTAACAAGCTTATTCCACGGTCTTTGCTATTCGCTCTTCGTAGAAGCGATGCGCAATAATGATAGCGATGCGGTGAA
ATCATTGACGGATTGCTACATGGATATGGTGTGCATCTATAACAATGGCGACGCACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090SPK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

72.637

97.573

0.709
  hapR Vibrio cholerae C6706

68.5

97.087

0.665
  hapR Vibrio cholerae strain A1552

68.5

97.087

0.665