Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SYN7502_RS03040 Genome accession   NC_019702
Coordinates   616740..618749 (-) Length   669 a.a.
NCBI ID   WP_015167421.1    Uniprot ID   K9SQ98
Organism   Synechococcus sp. PCC 7502     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 611740..623749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYN7502_RS03020 (Syn7502_00609) - 612723..613436 (+) 714 WP_015167418.1 hypothetical protein -
  SYN7502_RS03025 (Syn7502_00610) miaA 613451..614362 (+) 912 WP_015167419.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  SYN7502_RS03030 (Syn7502_00611) - 614339..615553 (-) 1215 WP_015167420.1 type II secretion system F family protein -
  SYN7502_RS03035 (Syn7502_00612) - 615581..616703 (-) 1123 Protein_608 type IV pilus twitching motility protein PilT -
  SYN7502_RS03040 (Syn7502_00613) pilB/pilB1 616740..618749 (-) 2010 WP_015167421.1 GspE/PulE family protein Machinery gene
  SYN7502_RS03045 (Syn7502_00614) murQ 618946..619857 (-) 912 WP_015167422.1 N-acetylmuramic acid 6-phosphate etherase -
  SYN7502_RS03050 (Syn7502_00615) rpiA 620005..620715 (+) 711 WP_015167423.1 ribose-5-phosphate isomerase RpiA -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 74170.22 Da        Isoelectric Point: 5.5908

>NTDB_id=54830 SYN7502_RS03040 WP_015167421.1 616740..618749(-) (pilB/pilB1) [Synechococcus sp. PCC 7502]
MPPSTPTNRVNALAIRSGRTPFEAKLIADGQATQEQFDQARKKSQESGITLVAALEDIIGQALAPGIVRFYKQVNLFELK
ILYGLESIDPAIEIEKFNPAKLSELIEANVVPIATCREYQVLPLSKDESSLLVALVSPANSKADTELKRIADAQKLSLKR
RVISQEDFLTIFDQIIDLQVTKSKSNDSVSEKDLEIADFDEGASLSDVSDPDDDLDKSVGENSAPIIKLVDQILVRALKE
GVSDIHIEPQEKELRIRFRKDGVLRPMITDEDKQLPRKIVNAVTSRFKIISDLNIAERRKPQDGKLKRNFQGRRVDFRVS
TLPTPYGEKIVLRILDNSNTQLGLDKLITDPESLKIMQDMARRPFGLILVTGPTGSGKTTTLYSTLAEANDPGINISTAE
DPIEYSLPGLTQCQVIRDKGMDFPMILRAFLRQDPDVILVGETRDKETAKTAIEAALTGHLVLTTLHTNDAPSAIARLDE
MGVEPFMTSTALIGVLAQRLLRKVCDNCRIPYNPSKEEIEQFGLPKSDMELTFYKANTIGHVEIAAAKAGRGRVCPKCGG
NGYKGRVGCYEIMKMTERLQSAINKGATTDAIKEIAVAEGMKTLMAYSFDLVREGRTTLEEVLRVTYTDKGREAEERAKR
KTSLECTTCHAILKPEMIECPYCTTVRDI

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=54830 SYN7502_RS03040 WP_015167421.1 616740..618749(-) (pilB/pilB1) [Synechococcus sp. PCC 7502]
ATGCCCCCATCTACTCCCACCAATAGAGTTAATGCCCTTGCCATTAGAAGTGGCAGAACTCCCTTTGAAGCAAAATTGAT
TGCAGATGGGCAAGCCACGCAAGAACAGTTTGACCAAGCTCGTAAAAAAAGCCAAGAATCAGGAATAACACTTGTTGCCG
CCCTAGAAGACATTATTGGTCAAGCACTTGCTCCTGGTATTGTTCGCTTTTATAAGCAAGTTAACCTATTTGAGCTTAAA
ATACTCTATGGGCTGGAAAGCATAGATCCCGCCATTGAAATTGAAAAGTTTAACCCCGCCAAACTAAGTGAACTGATCGA
AGCTAACGTAGTTCCAATTGCCACATGTCGAGAATATCAAGTTCTCCCCCTGTCAAAGGACGAATCATCCCTACTCGTAG
CACTAGTCTCACCTGCTAACTCCAAAGCAGATACTGAACTTAAACGCATAGCAGATGCTCAAAAGCTCAGTCTTAAGAGG
AGGGTGATTTCCCAAGAAGATTTCCTCACAATTTTTGACCAAATTATTGATCTGCAAGTTACAAAAAGTAAAAGTAATGA
TTCGGTCAGTGAAAAAGACCTAGAAATAGCAGATTTTGATGAAGGAGCTTCATTATCAGATGTTTCCGATCCCGATGACG
ATCTCGACAAATCCGTAGGTGAAAATTCCGCTCCGATTATTAAGCTTGTTGATCAAATTCTTGTCCGTGCCCTTAAAGAG
GGAGTATCAGATATTCACATTGAACCTCAAGAAAAGGAGTTAAGAATTAGATTCCGCAAAGATGGGGTACTCAGACCCAT
GATTACCGATGAAGATAAGCAACTGCCACGTAAGATTGTTAACGCTGTTACCTCAAGATTCAAAATTATCTCTGACCTGA
ATATTGCTGAACGCCGTAAACCTCAAGATGGCAAACTTAAGCGTAACTTCCAAGGGCGCAGGGTAGATTTTCGGGTCAGT
ACATTACCTACTCCCTACGGTGAAAAGATCGTACTACGGATTCTAGACAACTCCAATACTCAGCTTGGTTTAGATAAACT
AATTACTGATCCTGAAAGCTTAAAAATTATGCAAGACATGGCACGGCGACCATTCGGGCTGATTTTGGTTACAGGACCAA
CTGGCTCAGGTAAAACCACAACTCTTTACTCAACTCTAGCTGAAGCAAATGATCCTGGTATTAATATTAGTACCGCCGAA
GACCCCATTGAATATAGCTTGCCCGGTTTAACCCAGTGCCAAGTGATTCGAGATAAGGGTATGGATTTTCCCATGATTTT
ACGGGCATTCCTTCGTCAAGACCCTGATGTGATCCTTGTGGGAGAAACTAGAGATAAAGAAACTGCGAAAACTGCCATTG
AAGCTGCTTTAACTGGACACTTAGTATTAACAACTCTGCATACCAACGATGCTCCCAGTGCGATCGCCCGTCTTGATGAG
ATGGGGGTAGAACCGTTTATGACCAGTACAGCCTTAATTGGGGTTTTAGCACAAAGGCTACTGCGTAAAGTCTGTGATAA
TTGCCGCATTCCCTATAACCCTTCTAAAGAGGAAATTGAGCAGTTTGGACTACCAAAAAGCGATATGGAACTAACCTTCT
ATAAAGCTAATACTATTGGTCACGTTGAAATTGCGGCGGCTAAAGCAGGTAGAGGTCGAGTCTGTCCCAAATGTGGAGGC
AACGGCTATAAAGGTAGAGTTGGCTGCTATGAAATCATGAAAATGACCGAGCGGCTACAAAGTGCGATTAATAAAGGTGC
AACCACTGATGCGATCAAAGAAATTGCGGTAGCAGAAGGGATGAAAACTCTTATGGCTTACAGCTTTGATCTAGTGCGTG
AAGGTAGAACCACCCTTGAAGAAGTCTTGCGTGTTACCTACACAGATAAAGGGCGAGAAGCGGAAGAACGGGCAAAACGT
AAAACCAGCCTAGAATGTACAACTTGCCATGCCATCTTAAAACCAGAAATGATCGAGTGCCCTTACTGTACTACGGTTAG
AGATATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(75-179)

Type II/IV secretion system protein (T2SSE)

(233-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9SQ98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

55.935

100

0.564

Multiple sequence alignment