Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   J4N39_RS12260 Genome accession   NZ_CP071848
Coordinates   2601700..2602314 (+) Length   204 a.a.
NCBI ID   WP_252019813.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2596700..2607314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS12240 (J4N39_12250) - 2597266..2598183 (-) 918 WP_252019793.1 ABC transporter ATP-binding protein -
  J4N39_RS12245 (J4N39_12255) - 2598277..2599920 (-) 1644 WP_252019795.1 SulP family inorganic anion transporter -
  J4N39_RS12250 (J4N39_12260) can 2600150..2600809 (+) 660 WP_252019808.1 carbonate dehydratase -
  J4N39_RS12255 (J4N39_12265) hpt 2600875..2601405 (-) 531 WP_252019810.1 hypoxanthine phosphoribosyltransferase -
  J4N39_RS12260 (J4N39_12270) opaR 2601700..2602314 (+) 615 WP_252019813.1 TetR/AcrR family transcriptional regulator Regulator
  J4N39_RS12265 (J4N39_12275) - 2602424..2603251 (+) 828 WP_252019825.1 HDOD domain-containing protein -
  J4N39_RS12270 (J4N39_12280) lpdA 2603326..2604753 (-) 1428 WP_252019827.1 dihydrolipoyl dehydrogenase -
  J4N39_RS12275 (J4N39_12285) aceF 2604970..2606871 (-) 1902 WP_252019829.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23434.37 Da        Isoelectric Point: 6.1479

>NTDB_id=548298 J4N39_RS12260 WP_252019813.1 2601700..2602314(+) (opaR) [Vibrio sp. SCSIO 43136]
MDTVKKRPRTRLSPQKRKEQLLDIAIEVFARRGIGRGGHADIAEIAQVSVATVFNYFQTREDLVDEVLGQVENHYHAFVS
ENIDPDSSAESNLDHFTTQVINAALAGENWLKVWFEWSSSTREEVWPLFLSCNENSRKRLEAMFESAQNRGEVCDKHEPS
VLTHMLHGICYSLFVQANRNPDSAYLNQVKQSFLAMLCIYQDRK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=548298 J4N39_RS12260 WP_252019813.1 2601700..2602314(+) (opaR) [Vibrio sp. SCSIO 43136]
ATGGATACTGTAAAGAAGCGTCCACGCACGCGCCTGTCTCCACAAAAGCGTAAAGAACAGCTACTGGATATCGCAATTGA
AGTATTTGCTCGTCGTGGCATCGGCCGTGGCGGTCACGCAGATATTGCTGAAATTGCTCAAGTATCGGTGGCAACCGTGT
TTAATTACTTTCAAACTCGTGAAGATCTCGTCGATGAAGTCTTAGGACAAGTCGAAAATCACTACCACGCATTCGTCAGT
GAAAACATTGATCCCGATTCTAGCGCTGAATCTAATCTCGACCATTTCACTACCCAAGTGATTAACGCCGCACTAGCTGG
AGAAAACTGGCTCAAAGTTTGGTTTGAATGGAGCAGCTCAACACGTGAAGAAGTATGGCCGCTGTTCTTGAGCTGTAACG
AAAACAGCCGCAAACGTCTTGAAGCTATGTTTGAAAGTGCACAGAATCGTGGTGAAGTGTGTGATAAGCACGAACCTTCA
GTGCTTACTCACATGCTACACGGTATCTGTTACTCGCTGTTTGTACAAGCAAATCGCAATCCAGATTCAGCATATCTAAA
TCAAGTGAAGCAAAGCTTCCTTGCGATGCTGTGCATCTACCAAGACCGAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

61

98.039

0.598
  hapR Vibrio cholerae C6706

55

98.039

0.539
  hapR Vibrio cholerae strain A1552

55

98.039

0.539