Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   J4N39_RS04635 Genome accession   NZ_CP071848
Coordinates   962836..964239 (+) Length   467 a.a.
NCBI ID   WP_252022403.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 957836..969239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS04620 (J4N39_04620) - 958201..959037 (-) 837 WP_252022400.1 AraC family transcriptional regulator -
  J4N39_RS04630 (J4N39_04630) uvrB 960528..962561 (+) 2034 WP_252022401.1 excinuclease ABC subunit UvrB -
  J4N39_RS04635 (J4N39_04635) luxO 962836..964239 (+) 1404 WP_252022403.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  J4N39_RS04640 (J4N39_04640) - 964351..964698 (+) 348 WP_252022405.1 Hpt domain-containing protein -
  J4N39_RS04645 (J4N39_04645) - 964687..965577 (-) 891 WP_252022406.1 YvcK family protein -
  J4N39_RS04650 (J4N39_04650) moaA 965970..966959 (+) 990 WP_252022408.1 GTP 3',8-cyclase MoaA -
  J4N39_RS04655 (J4N39_04655) moaB 967004..967516 (+) 513 WP_252022410.1 molybdenum cofactor biosynthesis protein B -
  J4N39_RS04660 (J4N39_04660) moaC 967529..968008 (+) 480 WP_252022412.1 cyclic pyranopterin monophosphate synthase MoaC -
  J4N39_RS04665 (J4N39_04665) moaD 968005..968250 (+) 246 WP_252022414.1 molybdopterin synthase sulfur carrier subunit -
  J4N39_RS04670 (J4N39_04670) moaE 968253..968711 (+) 459 WP_252022415.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51461.09 Da        Isoelectric Point: 5.2677

>NTDB_id=548286 J4N39_RS04635 WP_252022403.1 962836..964239(+) (luxO) [Vibrio sp. SCSIO 43136]
MQNNNLSPRTKYLLMVEDTASVAALYRSYLMPLGIDIKIVGTGEDAIASLDKRIPDLILLDLRLPDMTGMDVLESVKRKY
PDVPVIFMTAHGSIDTAVEAMRKGAQDFLIKPCEADRLRVTVNNGIRKAGKLKLLADEPGSNNYQGFIGSSQTMQAVYRT
IDSAAPSKASVFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGASTDRQGAAELANG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVVEIAYSLLGFMSNEEGKGFARFAPDVIARFVNYEWPGNVRQLQNVLRNVVVLNQGSEISMEMLPPPLNLPSASAA
TMASSGEISTTLGVEDIRPLWITEKQAIEQAIDLCEGNIPRAAGYLEVSPSTLYRKLQSWKEVETIK

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=548286 J4N39_RS04635 WP_252022403.1 962836..964239(+) (luxO) [Vibrio sp. SCSIO 43136]
ATGCAAAACAATAACTTATCTCCAAGGACTAAGTATCTTCTGATGGTTGAAGATACCGCTTCTGTCGCAGCACTGTACCG
ATCTTACCTGATGCCACTCGGTATCGATATCAAGATCGTAGGTACTGGTGAAGACGCTATTGCCAGCCTAGACAAACGCA
TTCCTGACCTTATCCTGCTCGATTTGCGACTGCCTGATATGACAGGTATGGACGTACTTGAATCGGTGAAACGCAAATAT
CCTGATGTACCAGTGATCTTTATGACGGCACACGGTTCGATTGATACCGCCGTTGAAGCAATGCGTAAAGGTGCACAGGA
TTTCTTGATCAAGCCGTGTGAGGCTGACCGCCTTCGTGTCACTGTTAACAACGGTATCCGCAAAGCAGGCAAACTGAAAC
TACTCGCTGACGAACCAGGCAGTAACAACTATCAAGGCTTTATCGGTAGTAGCCAAACCATGCAAGCCGTTTATCGCACT
ATTGACTCGGCAGCACCAAGTAAGGCGTCGGTATTTATTACCGGTGAAAGTGGTACGGGTAAAGAAGTTTGTGCTGAAGC
AATTCACGCAGCGAGTAAGCGTGGTGACAAGCCGTTTATCGCAATTAACTGTGCAGCTATCCCCAAAGATCTGATTGAAA
GTGAACTGTTCGGCCACGTGAAAGGTGCGTTTACCGGGGCATCTACCGATAGACAGGGCGCAGCAGAGCTTGCTAATGGA
GGAACCTTGTTCCTAGATGAGCTTTGCGAAATGGATCTTGACCTGCAAACGAAACTTCTTCGATTTATTCAAACCGGTAC
GTTTCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTAGACGTGAGATTTGTCTGCGCAACCAACCGTGATCCGTGGAAAG
AAGTGCAAGAAGGCCGTTTTAGAGAAGATTTGTACTACAGACTGTACGTAATTCCATTGCATCTTCCACCGTTAAGAGAA
CGTGGTGAAGATGTGGTAGAGATTGCTTATTCTTTGCTCGGTTTTATGTCGAATGAAGAAGGAAAAGGTTTTGCTCGCTT
CGCACCAGACGTTATTGCTCGATTTGTGAATTACGAGTGGCCGGGTAACGTTCGTCAGCTACAGAACGTGCTACGAAATG
TGGTAGTCCTAAATCAAGGCAGCGAGATCAGCATGGAAATGTTGCCGCCACCGCTTAATTTACCGAGTGCCTCGGCCGCA
ACAATGGCTTCAAGCGGTGAAATTTCTACTACACTTGGAGTAGAAGACATCCGTCCACTTTGGATCACCGAAAAGCAAGC
GATAGAGCAGGCCATCGACTTGTGTGAAGGAAATATTCCCCGTGCTGCTGGATATTTAGAGGTCAGCCCTTCGACCTTAT
ATCGTAAGCTTCAAAGCTGGAAAGAAGTTGAAACCATCAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

82.183

96.146

0.79
  pilR Pseudomonas aeruginosa PAK

38.789

95.503

0.37