Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   J4N43_RS20475 Genome accession   NZ_CP071843
Coordinates   1081203..1082384 (+) Length   393 a.a.
NCBI ID   WP_053349163.1    Uniprot ID   A0AAW9AWG5
Organism   Vibrio sp. SCSIO 43009     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076203..1087384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N43_RS20470 (J4N43_20345) ylqF 1079921..1080865 (+) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  J4N43_RS20475 (J4N43_20350) cqsA 1081203..1082384 (+) 1182 WP_053349163.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  J4N43_RS20480 (J4N43_20355) cqsS 1082488..1084533 (-) 2046 WP_053303516.1 response regulator Regulator
  J4N43_RS20485 (J4N43_20360) - 1084897..1085514 (+) 618 WP_025767847.1 HAD family phosphatase -
  J4N43_RS20490 (J4N43_20365) - 1085605..1086153 (-) 549 WP_005376525.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43623.85 Da        Isoelectric Point: 6.3840

>NTDB_id=548228 J4N43_RS20475 WP_053349163.1 1081203..1082384(+) (cqsA) [Vibrio sp. SCSIO 43009]
MSETIQSKPLPSFIEERLDFYIQDLIEPNENKKHLVLGKRPPCNAVVLQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTS
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGILQGLGLTHKVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIRKSDDKRDILFERAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVYGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLTVCQQAFAHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=548228 J4N43_RS20475 WP_053349163.1 1081203..1082384(+) (cqsA) [Vibrio sp. SCSIO 43009]
ATGAGTGAAACTATACAAAGCAAACCACTTCCCTCCTTTATCGAGGAACGCCTAGATTTTTATATTCAAGATCTAATCGA
ACCGAATGAGAACAAAAAACACCTTGTTCTTGGTAAACGCCCACCGTGTAATGCCGTTGTCCTGCAAAGCAATGATTACC
TTGCACTGTCTCATAACAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCCCAGCACGATGACAACGTCGTGATGTCC
GCGATTTTCTTACAAGATGATGAATCGAAACCTGCATTTGAAACGCAACTAGCCAGTTTCGTTGGTATGCCTAGTTGTCT
ACTTTCTCAATCTGGTTGGGCTGCGAATGTCGGTTTATTGCAGACTATTTGTGCACCGAACATACCTGTGTACATTGATT
TCTTTGCACATATGTCTTTGTGGGAAGGCGCACGTATTGCCGGAGCACAAATTCATCCGTTCATGCATAACAACACCAGT
CACCTAAGAAAACAGATTTCACGTCACGGTTCAGGGATCATTGTTGTGGATTCGGTTTACAGCACTATCGGGACCATCGC
TCCTCTACGTGATATCTACGAAATAGCACAGGAGTTTGACTGCGGCCTGGTTGTAGATGAATCACACTCTTTAGGTACAC
ACGGTCCACAAGGTGCGGGGATACTGCAGGGTCTTGGCTTAACTCATAAGGTAGATTTTATTACCGTTAGTCTTGCCAAG
ACATTTGCTTATCGTGCTGGCGCGATTTTAGGCCCAGAAAAACTGGCGAAGACGCTTCCATTTGTGGCGTACCCTGCAAT
ATTTAGTTCTACCGTATTACCGCAAGAGATCATTCGGCTAGAGAAAACACTGGACGTCATAAGAAAATCAGATGATAAGC
GAGATATTCTGTTTGAAAGAGCCAAGTCTTTAGCCGTTGGTTTAAAACGCATTGGATTTACTATTCGCAGTGAATCACAA
ATTATCGCATTAGAATGCGGCAACGAGAGAAACACTGAGCGAGTCCGCGACTTTCTCGAAGAGCGAAATGTTTACGGCGC
AGTGTTTTGCCGCCCTGCAACTGGAAGGAACAAAAACATCATCCGTTTTTCAGTCAATGCAGACATGACAGCTGCTGAAG
TTGATCATGTACTCACTGTCTGCCAACAAGCATTTGCACACCCTGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567