Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   J4N43_RS20480 Genome accession   NZ_CP071843
Coordinates   1082488..1084533 (-) Length   681 a.a.
NCBI ID   WP_053303516.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43009     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1077488..1089533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N43_RS20470 (J4N43_20345) ylqF 1079921..1080865 (+) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  J4N43_RS20475 (J4N43_20350) cqsA 1081203..1082384 (+) 1182 WP_053349163.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  J4N43_RS20480 (J4N43_20355) cqsS 1082488..1084533 (-) 2046 WP_053303516.1 response regulator Regulator
  J4N43_RS20485 (J4N43_20360) - 1084897..1085514 (+) 618 WP_025767847.1 HAD family phosphatase -
  J4N43_RS20490 (J4N43_20365) - 1085605..1086153 (-) 549 WP_005376525.1 GNAT family N-acetyltransferase -
  J4N43_RS20495 (J4N43_20370) - 1086425..1087549 (+) 1125 WP_017821552.1 fatty acid desaturase -
  J4N43_RS20500 (J4N43_20375) dcuC 1087909..1089276 (+) 1368 WP_053349164.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78216.77 Da        Isoelectric Point: 5.2226

>NTDB_id=548229 J4N43_RS20480 WP_053303516.1 1082488..1084533(-) (cqsS) [Vibrio sp. SCSIO 43009]
MDSIRKVYQYAEPNLTLVGWMGFLGFPLYYFVWEFAFPQAYENLPLRLFCSLLFFGIIFRNRLSSTWRDYVPIYYQVTIT
LCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWVAKGFHLDLTMDWTHVPIFLFIY
VFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSILPNMKEAGKEQYVMSVEDVTLLREVSQDAMN
IIQSGNETIDLLLTSIDENRVSRSSFKKYSAHSVVEQAIESFSYKRATDRFAISLDARSEFEFLGSDTLLKYVMYNLFKN
AFHHRKSEDFHIHVSMISSERFNQIVVTDNGAGIAPDVLRNIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIECQSQLG
EWSQFTLTFPLTTSDTVTEIKNDLTKLKTILTVTSQDILVSKVTDISRFMGFDSTILDVNQVLKKKEYEFEFDLIFIDLE
SLDPRANQLDRLESLLSFTEARIVYLFEHHPTQRARKAAYEPIWIETQAWLLNTKPTIERLLYDSSYVSTPTASVTLDNS
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQEDVDLILMDIEMPIMDGVEASRRIRSSDKNYASVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=548229 J4N43_RS20480 WP_053303516.1 1082488..1084533(-) (cqsS) [Vibrio sp. SCSIO 43009]
ATGGACTCGATACGTAAGGTTTATCAATATGCAGAACCAAACCTAACTCTCGTTGGCTGGATGGGGTTTCTTGGCTTTCC
GCTGTACTACTTTGTCTGGGAGTTTGCCTTTCCACAGGCTTATGAAAATTTACCTCTTAGATTGTTTTGCTCGTTATTGT
TTTTCGGCATCATTTTTAGAAACCGCTTATCATCGACTTGGAGAGATTATGTTCCTATTTACTACCAAGTGACGATAACG
CTGTGCTTACCGTTTTTCTTTTTTTATATGTTACTGATGAATGACTGGTCCAATGTATGGGTTATGTCGTTTATGTCTGC
AATTTTCTTACACATTTTACTGGTTCATGTTACTAGGGTCATGTTTGCTCAAACCTTTGCTGGGATAGGTTTAGCAACAT
TCTTCGCTTGGGTTGCAAAAGGGTTCCATCTTGACTTGACCATGGATTGGACTCATGTGCCAATCTTTCTGTTTATTTAT
GTCTTCGGTAATTTGTTCTATTTTCGTAACCAAGTTGAACATGAAGCGAAAGTCTCGCTGGCAAAATCATTCGGGGCAGG
GATTGCACATGAAATGCGTAACCCGTTGAGTGGGCTTTGCACTTCAATAGATGTTATCCAGTCGATCTTGCCCAACATGA
AAGAGGCAGGAAAAGAGCAGTACGTCATGAGTGTAGAAGATGTCACCTTATTACGTGAAGTGAGTCAGGATGCAATGAAC
ATTATCCAATCGGGTAATGAAACCATCGATTTATTGCTGACTTCGATTGATGAAAATCGAGTTTCTCGTTCTAGCTTCAA
AAAATATTCAGCTCACTCGGTCGTTGAACAGGCAATTGAAAGCTTCAGTTATAAACGTGCCACTGATCGATTTGCCATAT
CGTTGGATGCGAGAAGTGAGTTTGAGTTTCTAGGTAGTGATACGCTGCTTAAATACGTTATGTATAATCTTTTCAAGAAT
GCCTTCCATCACCGTAAATCTGAAGATTTTCACATACATGTATCCATGATAAGTTCAGAACGCTTTAATCAAATTGTTGT
AACCGATAATGGTGCTGGTATTGCTCCTGATGTTCTACGCAATATCTTTCAAGACTTTTACACCACCGGCAAATCAGGAA
GTTATGGTTTGGGCCTACCGTTTTGTAAAAAAGTCATGCGTTCATTTGGGGGGAACATTGAGTGTCAATCTCAGTTAGGG
GAGTGGTCTCAATTTACGTTAACTTTCCCACTAACGACATCTGATACCGTTACTGAAATCAAAAACGATCTGACTAAACT
CAAAACCATTCTAACGGTGACTAGCCAAGATATCTTGGTGTCTAAAGTAACAGATATTAGCCGTTTTATGGGCTTTGACT
CGACAATTTTAGATGTCAACCAAGTACTCAAAAAGAAAGAGTACGAGTTCGAATTCGATCTGATTTTTATCGATCTTGAG
AGCTTAGATCCAAGAGCAAACCAATTGGATAGATTAGAATCTCTCTTGTCTTTCACTGAAGCACGCATCGTTTATCTTTT
TGAGCATCATCCGACTCAGAGAGCACGTAAGGCTGCATATGAACCTATTTGGATCGAAACGCAAGCCTGGTTATTGAATA
CTAAACCAACTATTGAGCGTCTCTTATATGATTCAAGCTATGTATCGACACCAACGGCCTCGGTGACGTTAGATAATTCA
AATAAGCGCACAATTATGGTCGTGGATGATAATGAATCTTTGCGTAAATTCACGGCAATGTTACTTGAAAAGCAAGGCTT
TGAAGTGATTCAGAAAGAAGACGGGCAGCAGGCTCTGGATACACTAGAGCAAGAAGATGTTGATCTCATTCTGATGGATA
TCGAAATGCCAATTATGGATGGTGTAGAAGCGTCTAGGCGAATTCGAAGCTCGGATAAAAACTATGCGTCGGTACCTATT
ATTGCGCATACAGGGGATAGTTCACCTGTCACGTTGGACAAAATTGGGTCTTCGGGTATGTCTGACTTCATCGTAAAACC
GGCGGATAAAAATCGTTTGTTCGATAAAATCGCAAACTGGATCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-412)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.781

100

0.501