Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LSP17_RS05740 Genome accession   NZ_CP089062
Coordinates   1240360..1241385 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain UNC_PaerCF38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1235360..1246385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP17_RS05715 (LSP17_05715) - 1235548..1235865 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  LSP17_RS05720 (LSP17_05720) trkA 1236014..1237387 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  LSP17_RS05725 (LSP17_05725) rsmB 1237415..1238719 (-) 1305 WP_003114643.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LSP17_RS05730 (LSP17_05730) fmt 1238716..1239660 (-) 945 WP_017001989.1 methionyl-tRNA formyltransferase -
  LSP17_RS05735 (LSP17_05735) def 1239715..1240221 (-) 507 WP_003107059.1 peptide deformylase -
  LSP17_RS05740 (LSP17_05740) tsaP 1240360..1241385 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LSP17_RS05745 (LSP17_05745) dprA 1241520..1242608 (+) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  LSP17_RS05750 (LSP17_05750) - 1242649..1243206 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  LSP17_RS05755 (LSP17_05755) - 1243216..1244193 (-) 978 WP_073669158.1 NADPH:quinone reductase -
  LSP17_RS05760 (LSP17_05760) hemF 1244384..1245301 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  LSP17_RS05765 (LSP17_05765) aroE 1245359..1246183 (+) 825 WP_073669159.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=548229 LSP17_RS05740 WP_003097294.1 1240360..1241385(+) (tsaP) [Pseudomonas aeruginosa strain UNC_PaerCF38]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=548229 LSP17_RS05740 WP_003097294.1 1240360..1241385(+) (tsaP) [Pseudomonas aeruginosa strain UNC_PaerCF38]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393