Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   J4N43_RS02930 Genome accession   NZ_CP071842
Coordinates   604401..605015 (-) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43009     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 599401..610015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N43_RS02920 (J4N43_02915) aceF 600668..602560 (+) 1893 WP_005396678.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  J4N43_RS02925 (J4N43_02920) lpdA 602828..604255 (+) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  J4N43_RS02930 (J4N43_02925) opaR 604401..605015 (-) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  J4N43_RS02935 (J4N43_02930) hpt 605335..605865 (+) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  J4N43_RS02940 (J4N43_02935) can 605942..606610 (-) 669 WP_005379996.1 carbonate dehydratase -
  J4N43_RS02945 (J4N43_02940) - 606892..608562 (+) 1671 WP_085569816.1 SulP family inorganic anion transporter -
  J4N43_RS02950 (J4N43_02945) - 608813..609730 (+) 918 WP_005380000.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=548204 J4N43_RS02930 WP_005379994.1 604401..605015(-) (opaR) [Vibrio sp. SCSIO 43009]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=548204 J4N43_RS02930 WP_005379994.1 604401..605015(-) (opaR) [Vibrio sp. SCSIO 43009]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
TTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTAGTACAAAACATGTTCATTAAAGCAATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACATCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711