Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   J4N40_RS03235 Genome accession   NZ_CP071840
Coordinates   661305..661919 (-) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43097     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 656305..666919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N40_RS03225 (J4N40_03220) aceF 657533..659464 (+) 1932 WP_250654366.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  J4N40_RS03230 (J4N40_03225) lpdA 659732..661159 (+) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  J4N40_RS03235 (J4N40_03230) opaR 661305..661919 (-) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  J4N40_RS03240 (J4N40_03235) hpt 662239..662769 (+) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  J4N40_RS03245 (J4N40_03240) can 662845..663513 (-) 669 WP_005379996.1 carbonate dehydratase -
  J4N40_RS03250 (J4N40_03245) - 663795..665465 (+) 1671 WP_005379997.1 SulP family inorganic anion transporter -
  J4N40_RS03255 (J4N40_03250) - 665716..666633 (+) 918 WP_005380000.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=548161 J4N40_RS03235 WP_005379994.1 661305..661919(-) (opaR) [Vibrio sp. SCSIO 43097]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=548161 J4N40_RS03235 WP_005379994.1 661305..661919(-) (opaR) [Vibrio sp. SCSIO 43097]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCT
GATAACATAGACCTAGACTTACACGCACGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GCACTAACCAGCTGCTAGTACAAAACATGTTCATTAAAGCAATTGAACGCGGTGAGGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAACTGAA
ACATCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711