Detailed information NTG0548158

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J4N40_RS03180
• Genome accession: NZ_CP071840
• Coordinates: 647533..648402 (-)
• Length: 289 a.a.
• NCBI ID: WP_025768182.1
• Uniprot ID: A0AA36UQF6
• Organism: Vibrio sp. SCSIO 43097
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 642533..653402

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N40_RS03150 (J4N40_03150)	rimM	642726..643274 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
J4N40_RS03155 (J4N40_03155)	trmD	643302..644063 (+)	762	WP_115386283.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
J4N40_RS03160 (J4N40_03160)	rplS	644105..644458 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
J4N40_RS03165 (J4N40_03165)	yacG	645797..645991 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
J4N40_RS03170 (J4N40_03170)	zapD	646150..646890 (-)	741	WP_005373086.1	cell division protein ZapD	-
J4N40_RS03175 (J4N40_03175)	coaE	646918..647532 (-)	615	WP_017635920.1	dephospho-CoA kinase	-
J4N40_RS03180 (J4N40_03180)	pilD	647533..648402 (-)	870	WP_025768182.1	A24 family peptidase	Machinery gene
J4N40_RS03185 (J4N40_03185)	pilC	648467..649690 (-)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
J4N40_RS03190 (J4N40_03190)	pilB	649714..651399 (-)	1686	WP_115386281.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J4N40_RS03195 (J4N40_03195)	-	651399..651833 (-)	435	WP_029803401.1	pilin	-
J4N40_RS03205 (J4N40_03200)	nadC	652097..652984 (-)	888	WP_115386280.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32597.78 Da
• Isoelectric Point: 7.0197

>NTDB_id=548158 J4N40_RS03180 WP_025768182.1 647533..648402(-) (pilD) [Vibrio sp. SCSIO 43097]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTTISTRYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=548158 J4N40_RS03180 WP_025768182.1 647533..648402(-) (pilD) [Vibrio sp. SCSIO 43097]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGACAACCATTAGCACACGCTATCC
ACTGATTGAACTGCTCACTGCATTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCACTAC
TCTTTTTCACTTTTATCTTAATCGCTGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.657	100	0.907
pilD	Vibrio cholerae strain A1552	72.222	99.654	0.72
pilD	Acinetobacter baumannii D1279779	51.812	95.502	0.495
pilD	Acinetobacter nosocomialis M2	51.282	94.464	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46