Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSE7367_RS03880 Genome accession   NC_019701
Coordinates   1000023..1001477 (+) Length   484 a.a.
NCBI ID   WP_015164058.1    Uniprot ID   K9SH14
Organism   Pseudanabaena sp. PCC 7367     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 995023..1006477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSE7367_RS03860 (Pse7367_0779) - 995050..996063 (-) 1014 WP_015164054.1 NAD(P)/FAD-dependent oxidoreductase -
  PSE7367_RS03865 (Pse7367_0780) - 996360..997241 (-) 882 WP_015164055.1 isoaspartyl peptidase/L-asparaginase -
  PSE7367_RS03870 (Pse7367_0781) ahr 997547..998548 (-) 1002 WP_015164056.1 NADPH-dependent aldehyde reductase Ahr -
  PSE7367_RS03875 (Pse7367_0782) - 998918..999487 (-) 570 WP_015164057.1 DNA-3-methyladenine glycosylase -
  PSE7367_RS03880 (Pse7367_0783) radA 1000023..1001477 (+) 1455 WP_015164058.1 DNA repair protein RadA Machinery gene
  PSE7367_RS20095 (Pse7367_0784) - 1002370..1003494 (+) 1125 WP_051037857.1 helix-turn-helix domain-containing protein -
  PSE7367_RS03890 (Pse7367_0786) eno 1003891..1005258 (-) 1368 WP_015164060.1 phosphopyruvate hydratase -
  PSE7367_RS03895 (Pse7367_0787) - 1005415..1006227 (-) 813 WP_015164061.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52070.87 Da        Isoelectric Point: 6.3118

>NTDB_id=54813 PSE7367_RS03880 WP_015164058.1 1000023..1001477(+) (radA) [Pseudanabaena sp. PCC 7367]
MAKSKSKYVCNSCGSEYAQMYGRCPDCGTWESLQEQVVEVATTGTNRLAKLPTSKQKAGKNFQPKPRKSLTLLQIGDDNQ
QRLGSGYGELDRVLGGGIVPGSLVLIGGEPGIGKSTLLLGMAQQLIAKEPVLYVCAEESAQQVKLRSQRLGLDPQAADNL
YLIPETDLESIVQELYAIRPTVAIVDSIQALYFASLTSAPGSVAQVRECTSALMRVAKRENINLFIVGHVTKEGAIAGPK
VLEHLVDTVLYFEGDRFASHRLLRSVKNRFGAAQEIGVFEMAERGLLEVENPSELFLGNREEPAPGTATIVACEGTRPLV
VELQSLVSPTSYSSPRRTTTGIENNRFLQILAVLEKRIGIPLSKLDAYVASAGGLNVAEPAADLGVAIAVAASFRDRIVD
PRTVLIGEVGLGGQVRAVSQLEIRLKEAAKLGFKKAIIPNTQTTQNYGLELIPVNKVMDAIVAALPRVPAIDNADPDLQK
LEDS

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=54813 PSE7367_RS03880 WP_015164058.1 1000023..1001477(+) (radA) [Pseudanabaena sp. PCC 7367]
ATGGCCAAGTCCAAATCCAAATATGTTTGCAATAGCTGTGGTTCGGAATACGCCCAGATGTATGGCCGTTGTCCCGATTG
TGGCACCTGGGAATCATTGCAAGAACAGGTGGTGGAAGTAGCAACTACTGGTACTAACCGCTTAGCCAAATTGCCAACCA
GTAAACAAAAAGCTGGCAAAAACTTTCAACCCAAACCGCGTAAATCATTGACCCTGCTGCAAATAGGCGATGATAACCAG
CAACGACTGGGATCGGGCTATGGCGAACTCGATCGGGTATTGGGTGGCGGAATTGTGCCGGGATCGCTGGTATTAATTGG
CGGTGAACCAGGCATCGGCAAAAGTACCTTGCTGTTGGGAATGGCACAGCAGTTGATCGCCAAGGAACCGGTTTTGTATG
TCTGTGCAGAAGAGTCGGCGCAACAGGTGAAACTGCGATCGCAACGTTTGGGGCTGGATCCCCAGGCTGCCGATAATTTG
TATTTGATCCCCGAAACTGACCTGGAAAGCATTGTCCAGGAGCTATATGCAATTAGGCCGACCGTGGCGATCGTAGATAG
TATTCAGGCACTCTATTTTGCCAGCCTTACTTCCGCACCGGGATCAGTGGCACAGGTACGCGAATGTACTTCGGCTTTGA
TGCGGGTGGCCAAGCGCGAGAATATTAATCTGTTTATTGTGGGGCACGTGACCAAAGAAGGGGCGATCGCTGGCCCAAAG
GTACTAGAGCATTTAGTCGATACTGTGCTCTATTTTGAAGGCGATCGCTTTGCCAGCCATAGATTATTGCGATCGGTAAA
GAATCGTTTTGGCGCTGCCCAGGAAATTGGCGTATTTGAAATGGCGGAACGGGGTTTATTGGAAGTAGAGAACCCATCGG
AGTTGTTTTTGGGTAATCGGGAAGAACCTGCCCCTGGCACTGCTACGATCGTTGCCTGTGAAGGAACCAGGCCGCTGGTA
GTCGAATTACAATCACTGGTTAGCCCCACCAGTTATAGCTCGCCTCGTCGTACCACCACGGGCATTGAGAACAATCGCTT
TTTACAAATTCTGGCCGTCTTAGAGAAAAGAATCGGCATTCCCCTTTCTAAGCTAGATGCCTATGTGGCTTCAGCCGGTG
GTCTGAATGTGGCGGAGCCTGCCGCTGATCTGGGCGTAGCGATCGCTGTGGCGGCTAGTTTCCGCGATCGGATTGTCGAT
CCCCGCACCGTATTAATTGGCGAGGTGGGTTTGGGGGGGCAGGTCAGGGCAGTATCACAACTAGAAATCAGGCTCAAAGA
GGCGGCTAAATTGGGCTTCAAAAAGGCGATCATTCCCAACACCCAAACCACTCAAAATTACGGATTGGAATTAATTCCAG
TGAATAAGGTGATGGATGCGATCGTGGCGGCTTTGCCCAGAGTGCCAGCGATCGACAATGCTGATCCTGATTTGCAAAAG
CTGGAAGATAGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(380-441)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(86-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9SH14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.32

96.901

0.488
  radA Streptococcus pneumoniae Rx1

48.989

91.942

0.45
  radA Streptococcus pneumoniae D39

48.989

91.942

0.45
  radA Streptococcus pneumoniae R6

48.989

91.942

0.45
  radA Streptococcus pneumoniae TIGR4

48.989

91.942

0.45
  radA Streptococcus mitis NCTC 12261

48.989

91.942

0.45
  radA Streptococcus mitis SK321

48.989

91.942

0.45

Multiple sequence alignment