Detailed information NTG0548096

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: CSB63_RS09790
• Genome accession: NZ_CP089060
• Coordinates: 1840307..1841407 (+)
• Length: 366 a.a.
• NCBI ID: WP_084830891.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain CH8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1835307..1846407

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSB63_RS09765 (CSB63_2062)	pgsA	1835849..1836391 (-)	543	WP_084826205.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
CSB63_RS09770 (CSB63_2063)	-	1836404..1837261 (-)	858	WP_134973544.1	helix-turn-helix domain-containing protein	-
CSB63_RS09775 (CSB63_2064)	yfmH	1837320..1838597 (-)	1278	WP_134973545.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
CSB63_RS09780 (CSB63_2065)	yfmF	1838599..1839849 (-)	1251	WP_134973546.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
CSB63_RS09785 (CSB63_2066)	yaaA	1839927..1840304 (+)	378	WP_084826206.1	S4 domain-containing protein YaaA	-
CSB63_RS09790 (CSB63_2067)	recF	1840307..1841407 (+)	1101	WP_084830891.1	DNA replication/repair protein RecF	Machinery gene
CSB63_RS09795 (CSB63_2068)	guaB	1841576..1843057 (-)	1482	WP_084830892.1	IMP dehydrogenase	-
CSB63_RS09800 (CSB63_2069)	trpS	1843234..1844256 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
CSB63_RS09805 (CSB63_2070)	-	1844684..1845556 (+)	873	WP_064355694.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42201.35 Da
• Isoelectric Point: 8.9569

>NTDB_id=548096 CSB63_RS09790 WP_084830891.1 1840307..1841407(+) (recF) [Streptococcus thermophilus strain CH8]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNRNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=548096 CSB63_RS09790 WP_084830891.1 1840307..1841407(+) (recF) [Streptococcus thermophilus strain CH8]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCTTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCGGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTGATTAAGAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432