Detailed information NTG0547813

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: J1M35_RS17250
• Genome accession: NZ_CP071796
• Coordinates: 3636637..3638157 (+)
• Length: 506 a.a.
• NCBI ID: WP_208008393.1
• Uniprot ID: -
• Organism: Ottowia testudinis strain 27C
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3631637..3643157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J1M35_RS17235 (J1M35_17235)	ffh	3632236..3633663 (-)	1428	WP_208008388.1	signal recognition particle protein	-
J1M35_RS17240 (J1M35_17240)	ccsA	3633837..3634646 (+)	810	WP_208008389.1	cytochrome c biogenesis protein CcsA	-
J1M35_RS17245 (J1M35_17245)	-	3634643..3636640 (+)	1998	WP_208008391.1	ATP-binding protein	-
J1M35_RS17250 (J1M35_17250)	pilR	3636637..3638157 (+)	1521	WP_208008393.1	sigma-54 dependent transcriptional regulator	Regulator
J1M35_RS17255 (J1M35_17255)	ampD	3638147..3638752 (+)	606	WP_208008395.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
J1M35_RS17260 (J1M35_17260)	-	3639089..3642028 (+)	2940	WP_208008397.1	ribonucleoside-diphosphate reductase subunit alpha	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 53274.53 Da
• Isoelectric Point: 4.9539

>NTDB_id=547813 J1M35_RS17250 WP_208008393.1 3636637..3638157(+) (pilR) [Ottowia testudinis strain 27C]
MNASDTVPGAARVLVVDDEPDLRTLYELTLLREGHHVDAAGSLAEARERLAGGVFDVVITDMRLPDGLGLELLRELAVSQ
RKERCIMITAYGSAENAVEALKCGAFDYLTKPVDPKQFRSVVASAVQAPERTPAAAPAAAALQAAAASPAAAGPAAEAPA
QAALARLVGDSAAMRAVKHRIAKVARSMAPVLVHGESGTGKELVAGAVHACSHRAEGPFVPVNCGAIPENLLEAEFFGAR
KGSYTGAAQDREGFFQAARGGTLFLDEIGDLPLAMQAKLLRAIQERRVRALGDTQEEAVDVRIVSATHKDLAAEVQAGRF
RQDLFYRLNVIEIVVPPLRERREDLPALCQALLTRIAADSGAPVASLSPRQMQEIAAAPLDGNVRELENLLHRAVALGEA
GDSGFDELPAPASQAREATPSIASEVAPAAAETDAPAPCAPPLPANLEAWLDAQEREVLVRALGETGFNRTAAAARLGLN
LRQMRYRMARLGITAPTGDEPADDAG

Nucleotide

• Length: 1521 bp

>NTDB_id=547813 J1M35_RS17250 WP_208008393.1 3636637..3638157(+) (pilR) [Ottowia testudinis strain 27C]
ATGAATGCTTCCGACACGGTGCCAGGCGCCGCCCGCGTGCTGGTGGTCGACGACGAACCCGACCTGCGCACCCTTTATGA
ACTGACGCTGCTGCGCGAGGGCCACCACGTCGACGCCGCCGGCTCGCTGGCCGAAGCGCGCGAACGGCTGGCGGGCGGTG
TGTTCGACGTCGTCATCACCGACATGCGACTGCCCGACGGCCTGGGGCTGGAGCTGCTGCGCGAGCTGGCCGTGAGCCAG
CGCAAGGAGCGCTGCATCATGATCACCGCCTACGGCTCGGCCGAGAACGCGGTCGAGGCACTGAAGTGCGGCGCCTTCGA
CTACCTCACCAAGCCGGTCGATCCCAAGCAGTTTCGCAGCGTCGTCGCGTCGGCCGTGCAAGCACCCGAGCGCACGCCGG
CCGCCGCACCCGCGGCGGCTGCCCTGCAGGCGGCCGCCGCGAGCCCAGCCGCGGCCGGCCCCGCCGCCGAGGCACCGGCG
CAGGCCGCGTTGGCCCGGTTGGTCGGCGACTCGGCCGCCATGCGCGCCGTCAAGCACCGCATCGCCAAGGTGGCGCGCAG
CATGGCGCCGGTGTTGGTGCACGGTGAATCGGGCACCGGCAAGGAGCTGGTGGCCGGCGCCGTGCACGCCTGCAGCCATC
GCGCCGAGGGGCCGTTCGTGCCGGTGAACTGCGGCGCCATCCCCGAGAACCTGCTGGAGGCCGAGTTCTTCGGCGCCCGC
AAAGGCTCCTACACCGGTGCCGCGCAAGACCGCGAAGGCTTCTTTCAAGCCGCGCGCGGCGGCACGTTGTTTCTCGACGA
GATCGGCGACCTGCCGCTGGCCATGCAGGCCAAGCTGCTGCGCGCCATCCAGGAGCGCCGGGTGCGCGCGCTCGGCGACA
CGCAAGAAGAGGCGGTGGACGTGCGCATCGTCAGCGCCACGCACAAGGACCTGGCGGCCGAAGTGCAGGCCGGACGTTTC
CGGCAAGACTTGTTCTATCGCCTCAACGTCATCGAGATCGTGGTGCCCCCGCTGCGCGAGCGGCGCGAAGACCTGCCGGC
GTTGTGCCAAGCCTTGCTGACCCGCATCGCGGCGGATTCGGGCGCGCCAGTGGCCAGCCTGTCACCGCGGCAGATGCAGG
AGATTGCCGCCGCGCCCCTGGACGGCAACGTGCGCGAACTCGAGAATCTGCTGCACCGCGCCGTGGCGCTCGGCGAGGCG
GGTGATTCAGGCTTTGACGAGCTTCCAGCGCCCGCCAGTCAAGCGCGAGAAGCTACGCCTTCAATAGCATCCGAGGTCGC
GCCGGCGGCGGCAGAGACCGACGCGCCCGCGCCGTGCGCCCCGCCGCTGCCGGCCAACCTCGAGGCCTGGCTGGATGCGC
AAGAGCGCGAGGTGCTGGTGCGCGCCTTGGGCGAAACCGGCTTCAATCGCACCGCTGCGGCGGCGCGGCTGGGGCTCAAC
CTGCGTCAGATGCGCTACCGCATGGCGCGCTTGGGCATCACGGCGCCAACCGGCGACGAGCCCGCCGACGATGCCGGCTG
A

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (452-490)

• Response regulator receiver domain (Response_reg) (13-122)

• Sigma-54 interaction domain (Sigma54_activat) (167-333)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	51.452	95.257	0.49
pilR	Acinetobacter baumannii strain A118	40.726	98.024	0.399