Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   J4G46_RS14650 Genome accession   NZ_CP071771
Coordinates   2693497..2694357 (+) Length   286 a.a.
NCBI ID   WP_208011976.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2688497..2699357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G46_RS12935 (J4G46_12935) secG 2689116..2689445 (-) 330 WP_208011975.1 preprotein translocase subunit SecG -
  J4G46_RS12940 (J4G46_12940) tpiA 2689459..2690250 (-) 792 WP_019836081.1 triose-phosphate isomerase -
  J4G46_RS12945 (J4G46_12945) pilB 2690528..2692240 (+) 1713 WP_004975865.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J4G46_RS12950 (J4G46_12950) pilC 2692271..2693497 (+) 1227 WP_004975864.1 type II secretion system F family protein Machinery gene
  J4G46_RS14650 (J4G46_12955) pilD 2693497..2694357 (+) 861 WP_208011976.1 A24 family peptidase Machinery gene
  J4G46_RS12960 (J4G46_12960) coaE 2694367..2694966 (+) 600 WP_178865996.1 dephospho-CoA kinase -
  J4G46_RS12965 (J4G46_12965) - 2694972..2695850 (-) 879 WP_042068576.1 DMT family transporter -
  J4G46_RS12970 (J4G46_12970) rlmB 2695945..2696694 (-) 750 WP_004975856.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  J4G46_RS12975 (J4G46_12975) - 2696883..2697206 (-) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31969.30 Da        Isoelectric Point: 8.0564

>NTDB_id=547691 J4G46_RS14650 WP_208011976.1 2693497..2694357(+) (pilD) [Acinetobacter towneri strain GX7]
MQELIAYFIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIIDESKITLSKPASTCPKCHNP
IRWYQNIPVLSWLVLRGKCGNCQNLISVRYPMIEVLTAGCALIVLAVFGPTVQMLFGLLLTYTLIALTFIDFDTQLLPDR
YTLPLAALGLAVNSYAIYTSPTSAIWGYVIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=547691 J4G46_RS14650 WP_208011976.1 2693497..2694357(+) (pilD) [Acinetobacter towneri strain GX7]
ATGCAAGAATTAATCGCGTACTTTATCCAAAATCCAACTGCGCTCTATATCGCAGTTGGACTTTTTAGTTTATGTATTGG
CAGTTTTTTGAATGTGGTGATTTACCGCACCCCAAAAATGATGGAACAGGAGTGGCGTAATGACTGCCAAATGTTATTAC
ATCCTGAACAAGCCATTATTGATGAAAGTAAAATCACCCTGAGCAAACCTGCATCGACCTGCCCCAAATGTCACAACCCA
ATTCGTTGGTATCAAAATATTCCTGTGCTGAGTTGGTTGGTATTACGCGGTAAATGTGGCAACTGCCAAAACCTGATCAG
CGTACGTTATCCAATGATTGAAGTATTAACCGCAGGTTGCGCCCTGATTGTGCTTGCGGTATTTGGCCCAACTGTACAAA
TGCTGTTTGGTTTGCTGCTCACTTATACCTTGATTGCACTCACCTTCATTGATTTTGATACACAACTCTTGCCAGACCGT
TACACCCTGCCTTTGGCTGCACTGGGTTTGGCAGTCAACAGCTATGCCATCTATACCTCACCGACATCGGCAATTTGGGG
TTATGTAATTGGCTTCCTATGTCTATGGGTGGTGTATTACCTGTTTAAAATCGTCACAGGCAAAGAAGGCATGGGCTATG
GTGACTTCAAGCTCCTTGCCGCTTTAGGTGCATGGATGGGGCCGATGATGTTACCCCTGATTGTGCTACTATCGTCCTTA
GTTGGGGCTATTATTGGCATTATTCTGTTAAAAGTGCGTAAAGAAAACCAACCCTTTGCATTTGGTCCGTATATCGCCAT
TGCGGGCTGGATTGCCTTTTTATGGGGCGAGCAAATCATGAAAGTATATTTGGGACAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

80.702

99.65

0.804
  pilD Acinetobacter baumannii D1279779

80.351

99.65

0.801
  pilD Vibrio cholerae strain A1552

54.851

93.706

0.514
  pilD Vibrio campbellii strain DS40M4

52.788

94.056

0.497
  pilD Neisseria gonorrhoeae MS11

45.788

95.455

0.437