NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	J4G46_RS08445	Genome accession	NZ_CP071771
Coordinates	1766254..1766883 (-)	Length	209 a.a.
NCBI ID	WP_180064495.1	Uniprot ID	-
Organism	Acinetobacter towneri strain GX7
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1761254..1771883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4G46_RS08415 (J4G46_08415)	-	1761562..1761993 (-)	432	WP_004976780.1	SRPBCC family protein	-
J4G46_RS08420 (J4G46_08420)	tadA	1762059..1762586 (-)	528	WP_136144582.1	tRNA adenosine(34) deaminase TadA	-
J4G46_RS08425 (J4G46_08425)	-	1762614..1763735 (-)	1122	WP_208011782.1	enoyl-CoA hydratase/isomerase family protein	-
J4G46_RS08430 (J4G46_08430)	ung	1763732..1764445 (-)	714	WP_168419008.1	uracil-DNA glycosylase	-
J4G46_RS08435 (J4G46_08435)	-	1764483..1765079 (-)	597	WP_194558645.1	6-carboxytetrahydropterin synthase	-
J4G46_RS08440 (J4G46_08440)	gspK	1765258..1766238 (-)	981	WP_208011783.1	type II secretion system minor pseudopilin GspK	-
J4G46_RS08445 (J4G46_08445)	xcpW	1766254..1766883 (-)	630	WP_180064495.1	type II secretion system minor pseudopilin GspJ	Machinery gene
J4G46_RS08450 (J4G46_08450)	xcpV	1766880..1767260 (-)	381	WP_194558643.1	type II secretion system minor pseudopilin GspI	Machinery gene
J4G46_RS08455 (J4G46_08455)	-	1767250..1767801 (-)	552	WP_180064497.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
J4G46_RS08460 (J4G46_08460)	-	1767808..1768422 (-)	615	WP_208012391.1	TetR/AcrR family transcriptional regulator	-
J4G46_RS08465 (J4G46_08465)	-	1768516..1769289 (-)	774	WP_208011784.1	TatD family hydrolase	-
J4G46_RS08470 (J4G46_08470)	-	1769314..1769655 (-)	342	WP_208012392.1	PilZ domain-containing protein	-
J4G46_RS08475 (J4G46_08475)	-	1769666..1770655 (-)	990	WP_131261482.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
J4G46_RS08480 (J4G46_08480)	kdsB	1770670..1771431 (-)	762	WP_004976805.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 209 a.a. Molecular weight: 24007.31 Da Isoelectric Point: 7.3144

                                >NTDB_id=547676 J4G46_RS08445 WP_180064495.1 1766254..1766883(-) (xcpW) [Acinetobacter towneri strain GX7]

MSARKGFTLVELLVAIAIFAVLSALGWKVFDYLSKVKDRNAMHEANLEQLQESYQQILRDTLQAVPLAANVKGQQQPALV

LQNGRFNFSKTGVTDPLQQGISPNERVEYQYRADEKKVYRLKYRNLHQTGHDQPESSVLLDQVDAFEIVVLNPQTLNSWP

ENPIDPNQTEQLRILPKGIKINLTVRDVQYEWVFSLLQTDFLNKNNQNK

Nucleotide

Download Length: 630 bp

                                >NTDB_id=547676 J4G46_RS08445 WP_180064495.1 1766254..1766883(-) (xcpW) [Acinetobacter towneri strain GX7]

ATGAGTGCAAGAAAAGGCTTTACCCTAGTTGAGTTATTGGTTGCGATTGCCATTTTTGCTGTGCTGTCTGCATTGGGTTG

GAAAGTATTTGACTATTTATCTAAAGTCAAAGACCGTAATGCCATGCATGAAGCTAATTTAGAACAGTTACAAGAAAGCT

ATCAGCAAATCTTACGTGATACATTACAGGCTGTGCCTTTGGCTGCGAATGTCAAAGGGCAGCAACAACCTGCATTGGTC

TTACAGAATGGACGTTTTAATTTTAGTAAAACAGGTGTGACTGATCCTTTGCAACAAGGTATTTCACCGAATGAACGTGT

TGAATATCAATATCGTGCCGATGAAAAAAAGGTGTATCGTTTAAAATATCGTAATTTGCATCAAACAGGGCATGACCAGC

CTGAATCGAGCGTGTTGTTGGATCAGGTCGATGCGTTTGAAATAGTGGTTTTAAATCCTCAAACATTAAATAGCTGGCCA

GAAAACCCGATCGATCCAAACCAAACCGAGCAGCTTCGAATTTTACCCAAAGGCATAAAAATTAATTTGACTGTGCGTGA

TGTACAGTATGAATGGGTTTTTAGCTTATTACAGACTGATTTTTTAAATAAAAATAACCAAAATAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-193)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	62.189	96.172	0.598

Detailed information NTG0547676