Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   J4G46_RS08450 Genome accession   NZ_CP071771
Coordinates   1766880..1767260 (-) Length   126 a.a.
NCBI ID   WP_194558643.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX7     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1761880..1772260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G46_RS08420 (J4G46_08420) tadA 1762059..1762586 (-) 528 WP_136144582.1 tRNA adenosine(34) deaminase TadA -
  J4G46_RS08425 (J4G46_08425) - 1762614..1763735 (-) 1122 WP_208011782.1 enoyl-CoA hydratase/isomerase family protein -
  J4G46_RS08430 (J4G46_08430) ung 1763732..1764445 (-) 714 WP_168419008.1 uracil-DNA glycosylase -
  J4G46_RS08435 (J4G46_08435) - 1764483..1765079 (-) 597 WP_194558645.1 6-carboxytetrahydropterin synthase -
  J4G46_RS08440 (J4G46_08440) gspK 1765258..1766238 (-) 981 WP_208011783.1 type II secretion system minor pseudopilin GspK -
  J4G46_RS08445 (J4G46_08445) xcpW 1766254..1766883 (-) 630 WP_180064495.1 type II secretion system minor pseudopilin GspJ Machinery gene
  J4G46_RS08450 (J4G46_08450) xcpV 1766880..1767260 (-) 381 WP_194558643.1 type II secretion system minor pseudopilin GspI Machinery gene
  J4G46_RS08455 (J4G46_08455) - 1767250..1767801 (-) 552 WP_180064497.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  J4G46_RS08460 (J4G46_08460) - 1767808..1768422 (-) 615 WP_208012391.1 TetR/AcrR family transcriptional regulator -
  J4G46_RS08465 (J4G46_08465) - 1768516..1769289 (-) 774 WP_208011784.1 TatD family hydrolase -
  J4G46_RS08470 (J4G46_08470) - 1769314..1769655 (-) 342 WP_208012392.1 PilZ domain-containing protein -
  J4G46_RS08475 (J4G46_08475) - 1769666..1770655 (-) 990 WP_131261482.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  J4G46_RS08480 (J4G46_08480) kdsB 1770670..1771431 (-) 762 WP_004976805.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13921.93 Da        Isoelectric Point: 5.0354

>NTDB_id=547677 J4G46_RS08450 WP_194558643.1 1766880..1767260(-) (xcpV) [Acinetobacter towneri strain GX7]
MKVNGFTLLEVMVALAIFATAAMAMTKVAMQYTQSTANAILRTKAQFVALNEVASMEMNRQWLSGTESKQVTQQGETWQI
DKSTQATISPNVQRVDIQISLYNTEIGQVEAGVTSLVFFNAREQNP

Nucleotide


Download         Length: 381 bp        

>NTDB_id=547677 J4G46_RS08450 WP_194558643.1 1766880..1767260(-) (xcpV) [Acinetobacter towneri strain GX7]
ATGAAAGTTAACGGATTTACACTGCTTGAAGTGATGGTCGCTTTAGCTATTTTTGCAACGGCCGCCATGGCCATGACCAA
AGTAGCCATGCAGTACACTCAATCTACCGCAAACGCTATTTTAAGAACCAAGGCACAATTTGTGGCCTTGAATGAAGTGG
CATCTATGGAAATGAATCGCCAGTGGTTAAGTGGCACCGAGTCAAAACAGGTTACCCAGCAGGGCGAAACATGGCAAATT
GACAAGTCTACTCAAGCAACCATTAGCCCAAATGTACAGCGTGTGGATATTCAAATCAGTTTATATAATACAGAGATTGG
ACAGGTTGAAGCAGGGGTAACGTCTTTGGTGTTTTTTAATGCACGTGAGCAAAACCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

75

95.238

0.714