Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J4G46_RS02405 Genome accession   NZ_CP071771
Coordinates   500746..501381 (-) Length   211 a.a.
NCBI ID   WP_180079537.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 495746..506381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G46_RS02370 (J4G46_02370) mlaE 495943..496722 (+) 780 WP_004974646.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  J4G46_RS02375 (J4G46_02375) - 496722..497399 (+) 678 WP_004974648.1 outer membrane lipid asymmetry maintenance protein MlaD -
  J4G46_RS02380 (J4G46_02380) - 497415..498050 (+) 636 WP_004974651.1 ABC transporter substrate-binding protein -
  J4G46_RS02385 (J4G46_02385) - 498063..498350 (+) 288 WP_154320296.1 STAS domain-containing protein -
  J4G46_RS02390 (J4G46_02390) - 498482..499495 (-) 1014 WP_096901036.1 CorA family divalent cation transporter -
  J4G46_RS02395 (J4G46_02395) - 499650..500252 (+) 603 WP_026438479.1 TIGR00730 family Rossman fold protein -
  J4G46_RS02400 (J4G46_02400) - 500254..500667 (+) 414 WP_179995921.1 NUDIX domain-containing protein -
  J4G46_RS02405 (J4G46_02405) comF 500746..501381 (-) 636 WP_180079537.1 phosphoribosyltransferase family protein Machinery gene
  J4G46_RS02410 (J4G46_02410) recG 501400..503445 (-) 2046 WP_167846341.1 ATP-dependent DNA helicase RecG -
  J4G46_RS02415 (J4G46_02415) - 503482..504315 (+) 834 WP_208012147.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24609.64 Da        Isoelectric Point: 10.0399

>NTDB_id=547663 J4G46_RS02405 WP_180079537.1 500746..501381(-) (comF) [Acinetobacter towneri strain GX7]
MTQPISLVQRGIQWLRQLQPCQLCHSDTQWQHSVCQTCWQQLPWRSQAVQRQEMQIQVTFDYHYPINRIIQQFKYEQQLH
YQLLLVGALKQLSYPKIQAIVPMPISTARLTERGYNQSLLLAKGLARHLNVPIWQPVTRLQQHAQKGLSRLERLEDIQQQ
FQIQNAPKIRFRRVLIVDDVVTTGSSIHALKQQLLKLGCQKVEAVCLASAE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=547663 J4G46_RS02405 WP_180079537.1 500746..501381(-) (comF) [Acinetobacter towneri strain GX7]
ATGACTCAGCCGATTAGCCTAGTACAACGTGGCATACAATGGCTGCGCCAACTGCAGCCGTGTCAGCTTTGCCATAGCGA
CACGCAATGGCAACATTCGGTCTGTCAAACCTGTTGGCAACAATTGCCGTGGCGTAGCCAAGCGGTACAACGACAAGAAA
TGCAGATTCAAGTCACTTTTGATTATCACTATCCAATTAATCGCATCATTCAACAATTTAAATATGAACAGCAGTTACAT
TACCAACTGCTTTTAGTAGGCGCGCTAAAACAACTGTCTTATCCTAAAATCCAAGCCATTGTACCGATGCCCATTTCCAC
TGCCCGCTTGACTGAACGCGGCTACAATCAATCTTTATTGTTAGCAAAAGGACTAGCGCGGCATTTAAATGTCCCGATTT
GGCAACCTGTGACCCGCTTACAACAGCACGCGCAAAAAGGCTTAAGTCGCTTAGAACGATTGGAAGACATCCAACAGCAA
TTTCAAATTCAGAATGCGCCTAAAATCCGTTTTCGTCGGGTTTTAATTGTGGATGATGTGGTCACGACGGGCAGTTCAAT
TCATGCACTCAAACAGCAGTTGCTCAAGCTCGGCTGTCAAAAAGTCGAAGCAGTCTGTCTCGCCAGTGCTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.307

94.313

0.578
  comF Acinetobacter baumannii D1279779

60.804

94.313

0.573