Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   J4G45_RS13170 Genome accession   NZ_CP071770
Coordinates   2524721..2526283 (+) Length   520 a.a.
NCBI ID   WP_207973860.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2519721..2531283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G45_RS13150 (J4G45_13155) - 2520116..2521420 (+) 1305 WP_004975708.1 homoserine dehydrogenase -
  J4G45_RS13155 (J4G45_13160) thrC 2521478..2522617 (+) 1140 WP_004975706.1 threonine synthase -
  J4G45_RS13160 (J4G45_13165) - 2522738..2523829 (-) 1092 WP_131260992.1 serine hydrolase -
  J4G45_RS13165 (J4G45_13170) - 2524045..2524680 (+) 636 WP_004975702.1 response regulator transcription factor GacA -
  J4G45_RS13170 (J4G45_13175) pilS 2524721..2526283 (+) 1563 WP_207973860.1 sensor histidine kinase Regulator
  J4G45_RS13175 (J4G45_13180) pilR 2526353..2527786 (+) 1434 WP_178318308.1 sigma-54-dependent transcriptional regulator Regulator
  J4G45_RS13180 (J4G45_13185) - 2527836..2528999 (-) 1164 WP_136144310.1 S41 family peptidase -
  J4G45_RS13185 (J4G45_13190) gpmI 2529024..2530571 (-) 1548 WP_104852912.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59280.77 Da        Isoelectric Point: 7.1904

>NTDB_id=547644 J4G45_RS13170 WP_207973860.1 2524721..2526283(+) (pilS) [Acinetobacter towneri strain GX5]
MPDLKQHSELNQYHLGMWYGTYRLLIAFCLLLITLLTFQQLGTQYQHPGLYLYTLVCYFIFSCLQLISYKYIPFKSTQQL
TLFFAVDIIALSSLTFASDGPNLYLSLLFVITIFAASLLLQKRKALAITLIAMIMVIYQHFVGSLLDFSSLNNIGQSALL
AFLFWVVYGSGRIAVRRFQILENLNFSQSLELNRLQNINRYILEQTEMGYLVLDENCHVVLSNPAACHLLGIHPKYAHAT
YPLYKIQPDLFDLFKFDQLQDGEKFQFESQLSHFHVHIQVQKLKVPHQTLTLLALQDGRKINQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANNLFTGSDAAQQQLLSDMISKQATRIDKIIHDTLSMVKNKQTTPVAIQLNQFLPQFIQEDLPDAAS
QIQLTLTEQLSIQFDESQFRQVLINLIRNAIRHNAAQQPIEITVYPKATYIYIDVRDFGAGVANQDLLYLFQPFFSTEIN
GTGLGLYLSHSFCEANQAKLSYVEQEQGACFRMKCLRAIE

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=547644 J4G45_RS13170 WP_207973860.1 2524721..2526283(+) (pilS) [Acinetobacter towneri strain GX5]
ATGCCAGATTTAAAACAACATTCTGAGTTAAATCAGTATCATCTTGGCATGTGGTATGGTACTTACCGACTGCTGATTGC
CTTTTGTTTGCTGCTGATTACCCTACTCACCTTTCAGCAGCTTGGCACACAATATCAGCACCCGGGTTTATATCTATACA
CCTTGGTCTGCTATTTTATTTTTAGCTGCCTGCAACTGATCAGCTATAAATATATTCCTTTTAAAAGCACGCAACAACTG
ACCCTGTTTTTTGCAGTCGATATTATCGCGCTCAGTAGCCTGACTTTTGCGAGCGATGGCCCTAATTTATATTTAAGTCT
GCTGTTTGTGATCACGATTTTTGCAGCATCACTCTTGCTGCAAAAGCGTAAAGCCTTAGCCATTACCCTCATCGCGATGA
TTATGGTGATTTACCAACACTTTGTTGGGAGTTTGCTGGACTTTTCATCGCTAAATAATATTGGTCAAAGTGCGCTATTG
GCATTTTTATTTTGGGTGGTTTATGGCAGTGGACGTATTGCAGTACGGCGTTTCCAAATTTTAGAAAATCTAAATTTTTC
GCAATCTTTGGAATTAAACCGCCTACAAAATATCAACCGTTATATTTTAGAACAAACCGAAATGGGCTATTTGGTTTTAG
ATGAAAATTGCCATGTCGTCCTCAGTAACCCTGCAGCCTGTCATCTGTTGGGGATTCATCCTAAATATGCGCACGCGACC
TATCCATTGTATAAAATTCAGCCCGATTTATTTGATCTGTTCAAATTTGATCAATTGCAAGATGGAGAAAAATTTCAATT
CGAGTCGCAACTGAGTCATTTTCATGTGCATATTCAGGTACAAAAACTCAAAGTGCCACATCAAACGCTGACTTTATTGG
CGCTGCAGGATGGACGTAAAATCAATCAGCAAGTCCAGCAACTCAAATTAGCCGCCTTAGGACAACTCTCTGCCAGTATT
GCACACGAAATTCGCAACCCGTTGGCAGCCATTGTACAAGCCAACAATTTATTTACAGGCAGTGATGCAGCACAGCAACA
ATTGCTGTCCGACATGATCAGCAAACAAGCGACACGGATTGATAAAATTATTCACGATACGCTGAGCATGGTCAAAAATA
AACAAACCACGCCTGTCGCGATTCAGCTCAATCAATTTTTGCCACAATTCATTCAGGAAGATTTACCTGATGCAGCGAGT
CAAATTCAGCTTACACTGACCGAACAACTGAGTATTCAGTTTGATGAATCGCAGTTTCGCCAAGTGCTAATTAATCTGAT
TCGTAACGCCATTCGGCACAATGCTGCACAACAACCTATTGAGATTACGGTCTATCCGAAAGCAACTTATATTTATATTG
ATGTGCGGGATTTTGGTGCAGGTGTCGCCAATCAAGATCTCCTCTATCTGTTCCAGCCATTTTTCAGTACCGAAATCAAT
GGAACTGGTTTAGGATTGTATCTATCGCATAGTTTTTGTGAGGCGAATCAAGCCAAGCTGAGCTATGTAGAACAAGAACA
AGGCGCATGTTTCAGGATGAAATGTCTACGTGCCATTGAATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.406

97.115

0.577