Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   J4G45_RS13175 Genome accession   NZ_CP071770
Coordinates   2526353..2527786 (+) Length   477 a.a.
NCBI ID   WP_178318308.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2521353..2532786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G45_RS13155 (J4G45_13160) thrC 2521478..2522617 (+) 1140 WP_004975706.1 threonine synthase -
  J4G45_RS13160 (J4G45_13165) - 2522738..2523829 (-) 1092 WP_131260992.1 serine hydrolase -
  J4G45_RS13165 (J4G45_13170) - 2524045..2524680 (+) 636 WP_004975702.1 response regulator transcription factor GacA -
  J4G45_RS13170 (J4G45_13175) pilS 2524721..2526283 (+) 1563 WP_207973860.1 sensor histidine kinase Regulator
  J4G45_RS13175 (J4G45_13180) pilR 2526353..2527786 (+) 1434 WP_178318308.1 sigma-54-dependent transcriptional regulator Regulator
  J4G45_RS13180 (J4G45_13185) - 2527836..2528999 (-) 1164 WP_136144310.1 S41 family peptidase -
  J4G45_RS13185 (J4G45_13190) gpmI 2529024..2530571 (-) 1548 WP_104852912.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  J4G45_RS13190 (J4G45_13195) lptG 2530718..2531788 (-) 1071 WP_004975683.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53731.62 Da        Isoelectric Point: 5.8670

>NTDB_id=547645 J4G45_RS13175 WP_178318308.1 2526353..2527786(+) (pilR) [Acinetobacter towneri strain GX5]
MHAVQPLVLLVDDEEDLCTLMQMTLARMGIQTHVAYRLVQAKQLLAEHQYDACLTDLNLPDGNGLQLVEWISEQYPNVPV
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQIHLQQLLEKALNKPFDTTDHHSQDQLEYKMLIGQSLPIQQLRSTIKKIAR
SQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLD
EIAELPLSMQVKLLRAVQEKRIRPVGSDSEIDVDFRVISASHQDLESLVQQGRFRQDLFFRIHVMDLVLPALRERGQDIL
LLADHFIQKVAQEWDIPAKQLTPRAQQFLLEQYYPGNVRELRNIIERAITLSDDDVIDLKHLQTAPLRQFSMSNTATTES
QPTAETPQQIVTDVLLTGRKLPEEGLEAYLEKVEKDILLNALHLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEDE

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=547645 J4G45_RS13175 WP_178318308.1 2526353..2527786(+) (pilR) [Acinetobacter towneri strain GX5]
ATGCACGCTGTTCAACCTTTGGTTTTATTGGTCGATGACGAAGAAGACCTTTGTACCCTCATGCAGATGACTTTGGCACG
TATGGGGATTCAAACCCATGTCGCGTATCGTTTAGTGCAAGCCAAGCAGTTATTGGCAGAACATCAGTACGATGCTTGCT
TAACCGACTTAAACCTGCCCGATGGCAATGGCTTGCAACTGGTTGAATGGATTTCCGAACAATATCCGAATGTGCCTGTT
GCCGTATTGACCGCTTACGGCAATATGGATATTGCGATTGCTGCTTTAAAAGCAGGTGCATTTGACTTTGTCAGCAAGCC
TGTCAATCAAATACATTTACAGCAACTCCTTGAAAAAGCACTGAATAAACCTTTCGACACCACCGATCATCACAGCCAAG
ATCAGCTTGAATATAAAATGTTGATTGGGCAATCTTTGCCTATTCAGCAATTGCGCAGCACCATCAAAAAAATTGCGCGC
TCGCAAGCGCCTGTATTTATTACAGGCGAATCAGGTACGGGGAAAGAAGTTGTCGCCAATTTGGTTCACCGTTTAAGTAA
CCGCAACGAAGGACCATTTATTGCAATTAACTGTGGTGCAATCCCCACCGAACTCATGGAAAGCGAGCTATTTGGACACA
AAAAAGGTAGCTTTACAGGAGCGACTCAAGACAAACAAGGTCTGATTCAATCTGCACATGGTGGCAGCTTATTTTTAGAT
GAAATTGCCGAACTGCCACTGAGCATGCAAGTCAAACTGCTGCGTGCCGTTCAGGAAAAGCGCATCCGTCCTGTGGGTTC
AGATAGTGAAATTGATGTCGATTTTCGTGTGATCAGCGCCAGTCATCAGGACTTAGAAAGTTTGGTTCAGCAAGGACGTT
TCCGTCAGGATTTATTCTTCCGTATTCACGTGATGGATTTGGTCTTGCCTGCCTTGCGTGAACGTGGACAAGATATTCTG
TTATTGGCAGACCACTTCATTCAAAAAGTTGCACAAGAATGGGACATTCCTGCCAAACAACTGACACCTCGTGCCCAGCA
ATTTTTATTAGAACAGTACTATCCGGGTAATGTGCGTGAGTTACGCAATATTATTGAACGTGCCATTACCCTGAGTGATG
ATGATGTTATTGATCTCAAACACTTACAAACCGCACCCTTGCGCCAATTCAGTATGAGCAATACAGCAACCACTGAATCA
CAACCTACAGCAGAAACACCACAGCAGATCGTGACAGATGTATTGCTGACAGGACGCAAACTGCCTGAAGAAGGTTTAGA
AGCCTACTTGGAAAAAGTAGAAAAAGACATTTTACTGAATGCGCTGCACCTGACCCACTGGAACCGTACGTTGGCAGCAA
AAAAATTGGGCATGTCTTTCCGTTCTTTGCGCTATCGTCTGAAAAAGTTTGGATTAGATACTGAAGATGAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

76.827

100

0.771
  pilR Pseudomonas aeruginosa PAK

49.785

97.694

0.486