Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J4G45_RS02895 Genome accession   NZ_CP071770
Coordinates   424761..425396 (-) Length   211 a.a.
NCBI ID   WP_154320297.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419761..430396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G45_RS02860 (J4G45_02860) mlaE 419965..420744 (+) 780 WP_004974646.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  J4G45_RS02865 (J4G45_02865) - 420744..421421 (+) 678 WP_096901228.1 outer membrane lipid asymmetry maintenance protein MlaD -
  J4G45_RS02870 (J4G45_02870) - 421437..422072 (+) 636 WP_004974651.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  J4G45_RS02875 (J4G45_02875) - 422085..422372 (+) 288 WP_207973762.1 STAS domain-containing protein -
  J4G45_RS02880 (J4G45_02880) - 422504..423517 (-) 1014 WP_096901036.1 CorA family divalent cation transporter -
  J4G45_RS02885 (J4G45_02885) - 423672..424274 (+) 603 WP_026438479.1 TIGR00730 family Rossman fold protein -
  J4G45_RS02890 (J4G45_02890) - 424276..424686 (+) 411 WP_004974664.1 NUDIX hydrolase -
  J4G45_RS02895 (J4G45_02895) comF 424761..425396 (-) 636 WP_154320297.1 ComF family protein Machinery gene
  J4G45_RS02900 (J4G45_02900) recG 425415..427460 (-) 2046 WP_180044029.1 ATP-dependent DNA helicase RecG -
  J4G45_RS02905 (J4G45_02905) - 427497..428276 (+) 780 WP_004974669.1 NAD-dependent epimerase/dehydratase family protein -
  J4G45_RS02910 (J4G45_02910) - 428375..428623 (+) 249 WP_207973761.1 type II toxin-antitoxin system HicA family toxin -
  J4G45_RS02915 (J4G45_02915) - 428620..428955 (+) 336 WP_004974672.1 type II toxin-antitoxin system HicB family antitoxin -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24544.59 Da        Isoelectric Point: 9.3037

>NTDB_id=547619 J4G45_RS02895 WP_154320297.1 424761..425396(-) (comF) [Acinetobacter towneri strain GX5]
MTQPINLLQCGIQWLCQLQPCQLCHSDTQWQHSVCQTCWQQLPWRSQAVQRQEMQIQVTFDYHYPINRIIQQFKYEQQLH
YQLLLVGALKQLSYPKIQAIVPMPISTARLTERGYNQSLLLAKGLARHLNVPIWQPVTRLQQHAQKGLSRLERLEDIQQQ
FQIQNAPKIRFRRVLIVDDVVTTGSSIHALKQQLLKLGCQKVEAVCLASAE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=547619 J4G45_RS02895 WP_154320297.1 424761..425396(-) (comF) [Acinetobacter towneri strain GX5]
ATGACTCAGCCGATCAATCTACTACAATGCGGCATACAATGGCTGTGCCAACTGCAACCGTGTCAGCTCTGCCATAGCGA
CACGCAATGGCAACATTCGGTCTGTCAAACCTGTTGGCAACAATTGCCGTGGCGTAGCCAAGCGGTACAACGACAAGAAA
TGCAGATTCAAGTCACTTTTGATTATCACTATCCAATTAATCGCATCATTCAACAATTTAAATATGAACAGCAGTTACAT
TACCAACTGCTTTTAGTAGGCGCGCTAAAACAACTGTCTTATCCTAAAATCCAAGCCATTGTACCGATGCCAATTTCCAC
TGCCCGCTTGACTGAACGCGGCTACAATCAATCTTTATTGTTAGCAAAAGGACTAGCGCGGCATTTAAATGTCCCGATTT
GGCAACCTGTGACCCGCTTACAACAGCACGCGCAAAAAGGCTTAAGTCGCTTAGAACGATTGGAAGACATCCAACAGCAA
TTTCAAATTCAGAATGCGCCTAAAATCCGTTTTCGTCGGGTTTTAATTGTGGATGATGTGGTCACGACGGGCAGTTCAAT
TCATGCACTCAAACAGCAGTTGCTCAAGCTCGGCTGTCAAAAAGTCGAGGCGGTTTGTCTGGCCAGTGCTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.307

94.313

0.578
  comF Acinetobacter baumannii D1279779

60.804

94.313

0.573