Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HRE53_RS11375 Genome accession   NZ_CP071717
Coordinates   2447028..2447408 (+) Length   126 a.a.
NCBI ID   WP_212663534.1    Uniprot ID   -
Organism   Acaryochloris sp. 'Moss Beach'     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2442028..2452408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE53_RS11355 (HRE53_11055) - 2443069..2443608 (+) 540 WP_235110543.1 hypothetical protein -
  HRE53_RS11360 (HRE53_11060) - 2443653..2443934 (+) 282 WP_235110545.1 hypothetical protein -
  HRE53_RS11365 - 2444421..2445737 (+) 1317 WP_235110547.1 glycosyltransferase -
  HRE53_RS11370 - 2445694..2446551 (+) 858 WP_235110548.1 PilZ domain-containing protein -
  HRE53_RS11375 (HRE53_11070) pilH 2447028..2447408 (+) 381 WP_212663534.1 response regulator transcription factor Machinery gene
  HRE53_RS11380 (HRE53_11075) - 2447426..2447911 (+) 486 WP_235110550.1 CYTH domain-containing protein -
  HRE53_RS11385 (HRE53_11080) - 2447990..2448823 (-) 834 WP_235110552.1 prohibitin family protein -
  HRE53_RS11390 (HRE53_11085) - 2448854..2450263 (-) 1410 WP_235110554.1 cell wall metabolism sensor histidine kinase WalK -
  HRE53_RS11395 (HRE53_11090) hemJ 2450278..2450847 (-) 570 WP_235110556.1 protoporphyrinogen oxidase HemJ -
  HRE53_RS11400 (HRE53_11095) msrA 2451124..2451780 (-) 657 WP_212663539.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14259.58 Da        Isoelectric Point: 4.8947

>NTDB_id=547260 HRE53_RS11375 WP_212663534.1 2447028..2447408(+) (pilH) [Acaryochloris sp. 'Moss Beach']
MTTVMVVDDSPTMRAMLTDMLQRNGLEVIEAEDGLAAKTMLQASSYPDLVITDIVMPRMNGYELCRWVKNDLTDRNLPVI
MCSTKGEAFDRHWGMKQGGDAYITKPFNPSEMLDLIRKLLKTRAES

Nucleotide


Download         Length: 381 bp        

>NTDB_id=547260 HRE53_RS11375 WP_212663534.1 2447028..2447408(+) (pilH) [Acaryochloris sp. 'Moss Beach']
ATGACAACAGTAATGGTAGTTGATGACAGCCCCACCATGCGTGCCATGCTAACGGATATGTTACAGCGCAATGGTCTAGA
GGTCATTGAAGCTGAAGACGGCTTAGCAGCTAAAACAATGCTGCAGGCCAGTAGCTATCCAGACTTGGTGATCACAGATA
TTGTGATGCCTCGCATGAACGGCTATGAATTGTGCCGCTGGGTCAAAAATGACCTAACCGACCGCAACTTACCCGTGATT
ATGTGCTCTACCAAGGGTGAAGCATTTGATCGACATTGGGGCATGAAGCAAGGGGGAGACGCTTACATTACCAAACCCTT
TAACCCCTCAGAAATGCTCGATCTCATTCGTAAGCTACTCAAAACCCGGGCCGAGTCCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

54.098

96.825

0.524
  pilG Acinetobacter baumannii strain A118

47.368

90.476

0.429