Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LQT99_RS19105 Genome accession   NZ_CP088005
Coordinates   3860058..3860852 (-) Length   264 a.a.
NCBI ID   WP_007614969.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain bm     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3855058..3865852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQT99_RS19085 (LQT99_19035) - 3855380..3856387 (-) 1008 WP_032875428.1 ThiF family adenylyltransferase -
  LQT99_RS19090 (LQT99_19040) - 3856619..3858037 (-) 1419 WP_032875425.1 HAMP domain-containing sensor histidine kinase -
  LQT99_RS19095 (LQT99_19045) - 3858034..3858150 (-) 117 Protein_3704 winged helix-turn-helix domain-containing protein -
  LQT99_RS19100 (LQT99_19050) htrA 3858775..3859971 (-) 1197 WP_007614967.1 S1C family serine protease Regulator
  LQT99_RS19105 (LQT99_19055) vicX 3860058..3860852 (-) 795 WP_007614969.1 MBL fold metallo-hydrolase Regulator
  LQT99_RS19110 (LQT99_19060) yycI 3860867..3861706 (-) 840 WP_007614971.1 two-component system regulatory protein YycI -
  LQT99_RS19115 (LQT99_19065) yycH 3861693..3863051 (-) 1359 WP_032875419.1 two-component system activity regulator YycH -
  LQT99_RS19120 (LQT99_19070) walK 3863041..3864876 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  LQT99_RS19125 (LQT99_19075) walR 3864883..3865590 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29130.19 Da        Isoelectric Point: 6.0271

>NTDB_id=547207 LQT99_RS19105 WP_007614969.1 3860058..3860852(-) (vicX) [Bacillus amyloliquefaciens strain bm]
MGLQFSVLASGSTGNAFYLETDEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=547207 LQT99_RS19105 WP_007614969.1 3860058..3860852(-) (vicX) [Bacillus amyloliquefaciens strain bm]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAATGCGTTTTATCTGGAGACAGATGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGACTTCCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTCTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTCGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGATGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATTGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527