Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   J0X00_RS09480 Genome accession   NZ_CP071708
Coordinates   722559..723173 (+) Length   204 a.a.
NCBI ID   WP_136486116.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 717559..728173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS09455 (J0X00_09455) panC 717889..718767 (+) 879 WP_136486126.1 pantoate--beta-alanine ligase -
  J0X00_RS09460 (J0X00_09460) - 718836..719606 (-) 771 WP_136486124.1 ABC transporter permease -
  J0X00_RS09465 (J0X00_09465) - 719614..720531 (-) 918 WP_136486122.1 ABC transporter ATP-binding protein -
  J0X00_RS09470 (J0X00_09470) can 720861..721529 (+) 669 WP_136486120.1 carbonate dehydratase -
  J0X00_RS09475 (J0X00_09475) hpt 721591..722124 (-) 534 WP_136486118.1 hypoxanthine phosphoribosyltransferase -
  J0X00_RS09480 (J0X00_09480) opaR 722559..723173 (+) 615 WP_136486116.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  J0X00_RS09485 (J0X00_09485) lpdA 723347..724774 (-) 1428 WP_136486114.1 dihydrolipoyl dehydrogenase -
  J0X00_RS09490 (J0X00_09490) aceF 725032..726927 (-) 1896 WP_282477969.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23500.78 Da        Isoelectric Point: 5.1107

>NTDB_id=547136 J0X00_RS09480 WP_136486116.1 722559..723173(+) (opaR) [Vibrio sp. ABG19]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFANRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDAHAKENLGNITEQMVKLAIDDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLLKNMFAKAIERGEVCDQHDS
EDLATLFHGVCYSLFVQANRVRDEGQVLKLVQSYLDMLCIYKEQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=547136 J0X00_RS09480 WP_136486116.1 722559..723173(+) (opaR) [Vibrio sp. ABG19]
ATGGACGCATCTATCGAGAAACGCCCCAGAACCAGGCTTTCCCCGCAAAAACGTAAACTGCAATTAATGGAAATTGCGCT
GGAGGTTTTTGCTAATCGTGGGATTGGTCGAGGCGGTCACGCCGATATCGCAGAAATCGCTCAGGTTTCTGTCGCTACTG
TGTTTAACTACTTCCCGACTCGCGAAGATTTGGTCGATGACGTGCTCACTTATGTAGTACGCCAGTTTTCCAACTTCCTC
ACTGACAACATCGATCTCGATGCTCACGCTAAAGAAAATCTTGGCAACATCACCGAGCAGATGGTCAAACTGGCAATCGA
TGATTGCCACTGGCTGAAAGTGTGGTTTGAGTGGAGTGCTTCGACCCGTGATGAAGTGTGGCCGCTGTTTGTCTCCAGCA
ACCGCACCAACCAGCTGCTGCTGAAAAACATGTTTGCCAAGGCGATTGAGCGTGGTGAAGTGTGTGACCAGCATGACTCT
GAAGATCTGGCCACCCTGTTTCATGGTGTTTGCTACTCACTGTTCGTACAGGCAAATCGTGTGCGTGATGAAGGTCAGGT
GCTTAAGCTGGTGCAAAGCTATCTCGACATGCTGTGTATCTACAAAGAGCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.597

98.529

0.794
  hapR Vibrio cholerae C6706

77.723

99.02

0.77
  hapR Vibrio cholerae strain A1552

77.723

99.02

0.77