Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   J0X00_RS06120 Genome accession   NZ_CP071707
Coordinates   1367006..1368100 (-) Length   364 a.a.
NCBI ID   WP_282476658.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362006..1373100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS06105 (J0X00_06095) - 1363281..1363418 (-) 138 Protein_1217 hypothetical protein -
  J0X00_RS06110 (J0X00_06100) - 1363689..1364213 (+) 525 WP_136487665.1 hypothetical protein -
  J0X00_RS06115 (J0X00_06105) luxQ 1364398..1366986 (-) 2589 WP_282476657.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  J0X00_RS06120 (J0X00_06110) luxP 1367006..1368100 (-) 1095 WP_282476658.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  J0X00_RS06125 (J0X00_06115) - 1368511..1368810 (-) 300 WP_168797065.1 GIY-YIG nuclease family protein -
  J0X00_RS06130 (J0X00_06120) - 1368810..1369448 (-) 639 WP_282476659.1 YceH family protein -
  J0X00_RS06135 (J0X00_06125) - 1369925..1370242 (+) 318 WP_136487659.1 DUF496 family protein -
  J0X00_RS06140 (J0X00_06130) glpK 1370398..1371936 (-) 1539 WP_282476660.1 glycerol kinase GlpK -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41380.77 Da        Isoelectric Point: 5.4395

>NTDB_id=547135 J0X00_RS06120 WP_282476658.1 1367006..1368100(-) (luxP) [Vibrio sp. ABG19]
MKKALFLSFLLGFTPVATSYSSQLLSGYWHYQEFLNANPQQKQLTDQLSRAVRQAPVAMAGEQQKPVSISVVFPGQQVSD
YWVRNIKAFEMRMEELGIEYQINQVFTRPNLDTRQQSLSLMEALKNNSDYLIFTLDTTRHRKFIEHVLSSSPTKLILQNI
TTPVRDWDGRQPMMYVGFDHEMGALQLAHYYREHVPKGSKYSVLYFSEGYVSDARGDTFIENMERSGDYHLASSYYTKAT
EESGYEAALNIVKNDPDIKFIYACSTDVALGAVKALKELNRNDIMVNGWGGGSAELQALEDGTLDVTIMRMNDDTGIAMA
EVIKRDLEGLAVPTVFSGDFELVSHDDKQQISLFKQRAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=547135 J0X00_RS06120 WP_282476658.1 1367006..1368100(-) (luxP) [Vibrio sp. ABG19]
ATGAAGAAGGCGCTCTTTCTCTCTTTTTTACTTGGTTTCACCCCGGTAGCTACGTCCTATTCATCTCAATTGTTGAGCGG
ATACTGGCATTATCAGGAATTCTTAAATGCTAACCCACAGCAAAAGCAGTTGACTGACCAGTTGTCACGCGCCGTTCGCC
AGGCACCAGTTGCAATGGCAGGGGAACAACAAAAGCCCGTATCCATTTCCGTTGTTTTTCCCGGCCAGCAGGTTTCAGAC
TATTGGGTTCGCAATATAAAAGCGTTCGAAATGCGTATGGAAGAGCTGGGGATTGAATATCAGATCAATCAGGTCTTTAC
CCGGCCAAATCTGGACACACGTCAGCAAAGTCTCTCTCTGATGGAAGCGTTAAAAAACAATTCTGACTATTTAATTTTTA
CCCTGGATACGACACGGCACCGAAAGTTTATTGAACATGTACTAAGTTCTTCGCCAACTAAGTTGATCCTGCAAAATATT
ACGACGCCAGTCCGCGACTGGGACGGCAGACAGCCGATGATGTATGTTGGCTTTGATCATGAAATGGGTGCACTGCAACT
GGCCCATTATTATCGTGAGCATGTTCCCAAAGGCAGCAAGTATTCTGTACTGTATTTCTCCGAGGGCTATGTGAGCGATG
CGCGTGGTGATACCTTTATTGAGAATATGGAGCGCAGCGGTGATTATCATCTTGCTTCATCGTATTACACCAAGGCGACA
GAAGAGAGTGGTTATGAGGCTGCTCTGAATATTGTCAAAAATGATCCCGATATTAAATTCATCTACGCCTGTTCGACAGA
TGTGGCTTTGGGGGCGGTGAAGGCCCTGAAAGAACTCAACCGGAACGACATTATGGTGAACGGCTGGGGCGGCGGTTCGG
CAGAGCTGCAGGCGCTGGAGGATGGCACTTTGGATGTCACCATTATGCGCATGAATGATGATACTGGTATAGCGATGGCC
GAAGTGATTAAACGTGATCTCGAAGGGCTGGCTGTCCCGACGGTCTTTTCCGGCGATTTTGAGCTCGTTTCTCATGATGA
TAAGCAGCAGATCAGCTTATTCAAACAACGTGCGTTTCGGTATTCCGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

68.493

100

0.687