Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   LQT99_RS08590 Genome accession   NZ_CP088005
Coordinates   1702600..1703031 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain bm     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1697600..1708031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQT99_RS08570 (LQT99_08560) spoVS 1698170..1698430 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  LQT99_RS08575 (LQT99_08565) tdh 1698688..1699734 (+) 1047 WP_032874949.1 L-threonine 3-dehydrogenase -
  LQT99_RS08580 (LQT99_08570) - 1699747..1700925 (+) 1179 WP_087920765.1 glycine C-acetyltransferase -
  LQT99_RS08585 (LQT99_08575) miaB 1701068..1702597 (+) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LQT99_RS08590 (LQT99_08580) ymcA 1702600..1703031 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  LQT99_RS08595 (LQT99_08585) cotE 1703284..1703829 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  LQT99_RS08600 (LQT99_08590) hexA 1703948..1706533 (+) 2586 WP_032875230.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=547134 LQT99_RS08590 WP_003154113.1 1702600..1703031(+) (ymcA) [Bacillus amyloliquefaciens strain bm]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=547134 LQT99_RS08590 WP_003154113.1 1702600..1703031(+) (ymcA) [Bacillus amyloliquefaciens strain bm]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTTAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916