Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   J0X00_RS05270 Genome accession   NZ_CP071707
Coordinates   1165149..1167200 (-) Length   683 a.a.
NCBI ID   WP_282476541.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1160149..1172200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS05255 (J0X00_05245) clcA 1160953..1162386 (+) 1434 WP_136485665.1 H(+)/Cl(-) exchange transporter ClcA -
  J0X00_RS05260 (J0X00_05250) - 1162622..1163605 (+) 984 WP_136485663.1 TDT family transporter -
  J0X00_RS05265 (J0X00_05255) cqsA 1163836..1165017 (+) 1182 WP_282477004.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  J0X00_RS05270 (J0X00_05260) cqsS 1165149..1167200 (-) 2052 WP_282476541.1 hybrid sensor histidine kinase/response regulator Regulator
  J0X00_RS05275 (J0X00_05265) - 1167510..1170551 (-) 3042 WP_282476542.1 SMC family ATPase -
  J0X00_RS05280 (J0X00_05270) - 1170555..1171697 (-) 1143 WP_282476543.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78710.66 Da        Isoelectric Point: 5.7017

>NTDB_id=547133 J0X00_RS05270 WP_282476541.1 1165149..1167200(-) (cqsS) [Vibrio sp. ABG19]
MDVVKKIYQYAEPNLTLVGWMGLVGFPVYYYIWAFLFPQPYENIWLRLFCSCLFAGIAFRNSLPKLMQRYMPCYYLLSIS
FCLPFFFAYMLLMNDWSTVWAMSFMASIFLHILLVHETKVMLLQALLSVLAAYLVTYWVRDESLTDWILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRTILPAQPTDQRQGAHIDGQDLSLLYEILKNADD
VIHSGNETIDLLLTSIDENRVSTSTFKKQRAEQVVSHALKSFSYKRSLDRQAVSLSVEADFDFFGSDTLLKFALYNLLKN
AFYYQNGEQFAIDVTLTRDAQHNTIKVRDNGVGIAPDRLEEIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNISCESVLG
EWTEFILSFPAYHSEVVGHIKLDLMKTKTVLYVGDDGLLSRHLSEQSFYQGFRLHLLTLAEALQREEYELEYDLILIDLE
QVNGQWQSMVELETKLHATEAKIAYLYDKQNRYPINIERHLKVFPLEIRQLLMDTNQQLDHLFFEAEPLLPDHNVVPLKK
TRCERRILVVDDNQSLRTFTALLLEKQGYEVIQANDGQQALDEMEHNTFDLVLMDIEMPVIDGLAATKAIRESDKPYRHV
PIVGHTGDNSPLTIEKIQQSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=547133 J0X00_RS05270 WP_282476541.1 1165149..1167200(-) (cqsS) [Vibrio sp. ABG19]
ATGGACGTAGTCAAGAAAATATACCAGTATGCTGAGCCAAACCTGACTCTGGTCGGTTGGATGGGGCTTGTCGGCTTTCC
GGTGTACTACTACATCTGGGCGTTTTTATTCCCGCAGCCATATGAAAACATCTGGCTGCGGTTGTTCTGTTCCTGTCTGT
TTGCCGGTATCGCATTTCGCAACAGTTTGCCCAAACTGATGCAGCGTTATATGCCTTGTTATTATCTGCTCAGCATCAGC
TTCTGCTTACCGTTCTTCTTTGCTTATATGTTGCTGATGAACGATTGGTCGACGGTGTGGGCGATGTCGTTTATGGCGTC
TATTTTTCTGCATATCCTGCTGGTGCATGAGACCAAAGTGATGCTGCTGCAGGCGTTGTTGTCTGTCCTCGCAGCCTACC
TGGTGACGTATTGGGTACGCGATGAGTCTTTGACAGACTGGATCTTATGGCCTTATGTACCGATTTTTCTGTTTACCTAT
GTGTTTGGTAACCTGTTCTACTTCCGCAATCAGAGTTCGCATGAGTCCAAAGTGTCGATAGCGAAGTCATTTGGCGCGGG
GATCGCGCACGAGATGCGTAATCCGTTGAGCGCCTTAAAGTCTTCTGTGGACGTTTTGCGTACCATCTTGCCGGCGCAGC
CCACTGACCAACGTCAAGGCGCTCATATTGATGGTCAGGATCTGAGTCTATTGTACGAGATTCTTAAAAATGCCGACGAT
GTGATTCATTCGGGTAATGAGACTATTGATTTACTGCTGACATCTATTGATGAGAACCGAGTTTCAACGTCGACGTTTAA
AAAGCAGCGCGCAGAGCAAGTGGTCAGCCATGCGCTCAAATCGTTTTCGTACAAGCGATCGCTGGATCGTCAGGCGGTGA
GCCTGAGCGTTGAGGCAGATTTTGATTTTTTTGGTAGCGATACGTTATTAAAATTCGCGTTATATAACTTACTCAAAAAT
GCGTTTTATTATCAGAATGGCGAACAGTTTGCGATTGATGTGACCCTGACCCGTGATGCGCAACACAACACGATCAAGGT
GCGTGACAACGGAGTGGGTATTGCTCCGGACAGGCTGGAAGAAATTTTTAAAGACTTCTATACCTTTGGCAAAAATGGCA
GCTATGGTCTCGGATTACCGTTTTGCCGCAAGGTCATGAAATCGTTTGGTGGTAATATCAGCTGTGAATCTGTGTTGGGC
GAGTGGACGGAATTTATCCTCAGTTTTCCTGCCTATCACTCTGAAGTCGTCGGTCATATTAAGCTGGACCTGATGAAAAC
TAAAACGGTGCTCTACGTAGGCGATGACGGTTTGCTCAGCCGTCATTTAAGTGAACAGTCTTTTTATCAGGGCTTTCGTC
TGCATTTATTGACCCTGGCGGAAGCGTTACAACGTGAAGAGTATGAGCTGGAATATGATCTGATTCTGATCGATCTGGAA
CAGGTTAACGGTCAGTGGCAGTCGATGGTGGAGTTGGAAACTAAGTTACATGCGACTGAAGCCAAAATCGCCTACCTGTA
CGACAAGCAGAATCGTTATCCAATCAACATAGAACGTCATCTCAAAGTCTTTCCGCTTGAGATACGCCAACTGTTGATGG
ATACCAATCAGCAGCTTGATCATCTGTTTTTTGAGGCGGAACCGCTGTTGCCGGATCACAATGTGGTGCCGCTGAAAAAA
ACCAGATGTGAACGTCGTATTCTGGTGGTGGACGATAATCAGTCGCTGCGTACTTTCACCGCCTTGCTGCTGGAAAAGCA
GGGCTATGAAGTGATTCAGGCCAATGACGGCCAGCAGGCGCTGGATGAGATGGAACACAATACTTTCGACTTGGTGTTGA
TGGATATCGAGATGCCGGTCATTGATGGCCTCGCCGCGACCAAAGCGATTCGTGAATCTGATAAACCGTACCGTCATGTG
CCGATTGTGGGTCACACCGGTGATAACAGCCCGCTGACGATTGAAAAGATTCAGCAATCCGGTATGAACGATTACATTGT
TAAACCGGCTGATAAAGATAAGCTATTGGGTAAACTGGCCAATTGGATCTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(310-411)

Response regulator receiver domain (Response_reg)

(567-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

58.858

100

0.589