Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   J0X00_RS05265 Genome accession   NZ_CP071707
Coordinates   1163836..1165017 (+) Length   393 a.a.
NCBI ID   WP_282477004.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1158836..1170017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS05250 (J0X00_05240) - 1159270..1160256 (-) 987 WP_136485667.1 GTP-binding protein -
  J0X00_RS05255 (J0X00_05245) clcA 1160953..1162386 (+) 1434 WP_136485665.1 H(+)/Cl(-) exchange transporter ClcA -
  J0X00_RS05260 (J0X00_05250) - 1162622..1163605 (+) 984 WP_136485663.1 TDT family transporter -
  J0X00_RS05265 (J0X00_05255) cqsA 1163836..1165017 (+) 1182 WP_282477004.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  J0X00_RS05270 (J0X00_05260) cqsS 1165149..1167200 (-) 2052 WP_282476541.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43598.53 Da        Isoelectric Point: 6.2587

>NTDB_id=547132 J0X00_RS05265 WP_282477004.1 1163836..1165017(+) (cqsA) [Vibrio sp. ABG19]
MNTNAKIHYLPDFIQRRLEFFIEDLIHPNQNGKHLVLGTRPHDGDIVLQSNDYLSLANHPLIKARLKKAIDETQDSVFMS
AIFLQDQVSKPSLEQQLADYVHFDSCLLSQSGWNANTALLQTICPPDSHVYIDFFAHMSLWEGARYACANLHPFMHNNCD
HLRKLIQRNGPGLIAVDSVYSTLGTVAPLVDIVAIAQETGCAILVDESHSIGTHGIQGAGLVAELGLSSQVDFMTASLAK
TFAYRAGVIWTNNCANQCIPFVGYPAIFSSTILPYEIAALEATLDVIKSADKKREQLFNNARMLNQALNNIGITTRSQSQ
IIALETGDERNTEKVRDYLEQNGIFGAVFCRPATAKNRNIIRLSVTSSVTEQQIDKIVSVCHQAQQSGDVYFY

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=547132 J0X00_RS05265 WP_282477004.1 1163836..1165017(+) (cqsA) [Vibrio sp. ABG19]
ATGAACACCAATGCCAAAATCCATTACCTGCCTGATTTTATTCAGCGTCGGTTAGAGTTCTTTATTGAAGATTTAATTCA
TCCCAACCAGAACGGTAAACATCTGGTATTGGGAACAAGGCCGCACGACGGAGATATTGTATTGCAAAGCAATGATTATC
TCAGTCTGGCTAACCACCCTCTGATTAAAGCACGGCTGAAAAAGGCTATCGATGAGACACAGGACAGTGTTTTTATGTCA
GCCATTTTCCTCCAGGACCAGGTGTCCAAACCCAGTCTTGAACAACAGTTGGCAGATTATGTCCATTTTGATTCATGTCT
GTTGTCGCAGTCCGGCTGGAACGCCAACACAGCGCTATTGCAAACTATTTGCCCACCAGACAGCCACGTTTACATCGATT
TTTTTGCTCATATGTCACTGTGGGAAGGTGCCCGTTACGCCTGTGCGAACCTACATCCGTTTATGCATAATAACTGCGAT
CATCTGCGTAAGCTGATACAGCGCAACGGGCCAGGGCTGATCGCAGTCGACTCCGTCTACAGCACCCTCGGCACTGTTGC
GCCTTTGGTGGATATCGTAGCCATTGCGCAGGAAACCGGGTGCGCCATTCTGGTCGACGAATCGCATTCCATCGGCACAC
ACGGTATTCAGGGAGCGGGATTAGTTGCCGAGCTTGGCCTTTCTTCCCAGGTCGATTTTATGACTGCCAGCCTGGCAAAA
ACGTTCGCATACCGTGCCGGCGTTATCTGGACCAACAATTGCGCGAACCAGTGTATTCCTTTTGTCGGTTATCCGGCCAT
ATTCAGTTCGACCATTCTGCCGTATGAAATCGCGGCGCTTGAGGCTACATTGGACGTGATAAAAAGTGCCGACAAAAAGC
GTGAGCAATTATTTAATAATGCCCGCATGCTAAACCAGGCGCTGAATAATATCGGGATAACGACACGCAGCCAGTCACAA
ATTATTGCGCTGGAAACCGGAGATGAACGTAATACGGAAAAAGTGCGTGACTATCTGGAGCAAAATGGCATCTTTGGCGC
GGTATTTTGCCGGCCGGCAACGGCCAAAAACAGAAACATTATCCGTTTGTCGGTCACCAGTTCGGTCACCGAGCAGCAAA
TCGATAAAATCGTGTCTGTCTGCCATCAGGCGCAACAAAGCGGGGATGTTTATTTCTATTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

67.363

97.455

0.656