Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BV82_RS19300 Genome accession   NZ_CP071706
Coordinates   4155356..4157578 (-) Length   740 a.a.
NCBI ID   WP_036996494.1    Uniprot ID   A0AAP0SCW2
Organism   Pseudomonas donghuensis strain P482     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4150356..4162578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV82_RS19265 (BV82_4067) murB 4150748..4151767 (-) 1020 WP_010223214.1 UDP-N-acetylmuramate dehydrogenase -
  BV82_RS19270 (BV82_4068) - 4151764..4152228 (-) 465 WP_010223213.1 low molecular weight protein-tyrosine-phosphatase -
  BV82_RS19275 (BV82_4069) kdsB 4152228..4152992 (-) 765 WP_036996492.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BV82_RS19280 (BV82_4070) - 4152989..4153174 (-) 186 WP_003247142.1 Trm112 family protein -
  BV82_RS19285 (BV82_4071) lpxK 4153212..4154222 (-) 1011 WP_036996493.1 tetraacyldisaccharide 4'-kinase -
  BV82_RS19290 (BV82_4072) - 4154222..4154653 (-) 432 WP_010223210.1 ExbD/TolR family protein -
  BV82_RS19295 (BV82_4073) exbB 4154650..4155285 (-) 636 WP_010223209.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BV82_RS19300 (BV82_4074) comA 4155356..4157578 (-) 2223 WP_036996494.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BV82_RS19305 (BV82_4075) - 4157722..4158264 (+) 543 WP_010223207.1 DUF2062 domain-containing protein -
  BV82_RS19310 (BV82_4076) - 4158232..4159011 (-) 780 WP_010223206.1 ABC transporter permease -
  BV82_RS19315 (BV82_4077) - 4159008..4159940 (-) 933 WP_010223205.1 ABC transporter ATP-binding protein -
  BV82_RS19320 (BV82_4078) - 4160095..4160718 (-) 624 WP_010223204.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80265.99 Da        Isoelectric Point: 9.9024

>NTDB_id=547124 BV82_RS19300 WP_036996494.1 4155356..4157578(-) (comA) [Pseudomonas donghuensis strain P482]
MRTGMLALALGLISLGFLPALPSVWGLVLLTVVGLSCLPSRLWPIGLFLLGLSWACVSAQSALDQRLAAELDGRTLWIEG
RVTGLPEQGARSVRFELSAAHSRRAQLPRRIQLSWFGGPAVNSGEFWRLAVSLKRPSGLLNPHGPDQEASLLARRIGAIG
SVKAGERLAPATAAWRDHLRQRLLAVDAQGREAALAALVLGDGGGLAREDWQALQATGTVHLLVISGQHVGLLAGLVYAL
IAGLARLGWWPPRLPWLPCACALALAAALVYGVLAGFQVPVQRACVMLAMVLLWRLRFRHLGVGLPLLLALNAVLLWEPL
ASLQPGFWLSFVAVAILIFTFSGRLGAWNPWLAWGRAQWLIAIGLLPVLLAQGLPVSLTAPLINLLAVPWISLAVLPAAL
LGTLLLAVPYLGEGLLWLAGGLLDGLFRMLAEAAVWRPAWLPAALPFWSWLLVCLGAFLLLLPRGLPMRALGWPLLLLAA
FAPRERVPEGQVEVWQLDVGQGLAFILRTRHHAMLYDAGPAMGDFDLGERVVLPSLHKLGVRQLDLMLLSHADADHAGGA
RAVQRGLPVLRVLSGEASALPAVLQAQSCGSGERWQWDGVNFSLWQWHDAGDSNQDSCVLLVEAQGEKLLLTGDLDARGE
RAWVRDWQAGQVDWLQSPHHGSRSSSSEALLSATAPRGVLISRGRYNAFGHPHPEVMARYRTHGIQAYDNVEHGALRLRL
GAFGEPEGLRAQRRFWREPR

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=547124 BV82_RS19300 WP_036996494.1 4155356..4157578(-) (comA) [Pseudomonas donghuensis strain P482]
ATGCGCACAGGGATGTTGGCGCTTGCGCTCGGGCTGATCAGTCTCGGGTTTCTACCGGCTTTGCCGTCTGTCTGGGGACT
TGTCCTGCTGACAGTTGTCGGACTTTCCTGCTTGCCTTCGCGGCTCTGGCCAATCGGGTTGTTTCTGTTGGGGTTGAGCT
GGGCCTGTGTCTCGGCGCAATCGGCGCTGGACCAGCGTCTGGCGGCAGAACTCGATGGCCGTACCTTGTGGATTGAAGGC
CGGGTCACAGGCTTGCCGGAGCAGGGCGCGCGCTCGGTGCGCTTCGAGCTGAGCGCTGCCCACTCTCGCCGTGCGCAATT
GCCCCGGCGAATACAGCTCAGCTGGTTTGGCGGGCCAGCGGTCAACAGCGGTGAGTTTTGGCGATTGGCCGTCAGCCTCA
AACGCCCCTCCGGTTTGCTCAATCCTCATGGTCCCGATCAGGAAGCGAGCCTGTTGGCCCGGCGTATCGGTGCCATCGGC
AGCGTCAAGGCCGGCGAGCGCCTGGCACCGGCGACAGCGGCCTGGCGCGATCACCTGCGCCAGCGCTTGTTGGCTGTGGA
TGCCCAAGGCCGGGAGGCGGCGCTGGCCGCGCTGGTACTGGGTGATGGCGGCGGGTTGGCGCGCGAAGACTGGCAGGCGT
TGCAGGCAACCGGTACGGTGCACTTGCTGGTGATCTCTGGCCAGCATGTGGGGCTGCTGGCCGGGTTGGTGTATGCCTTG
ATTGCCGGGCTGGCGCGCCTTGGCTGGTGGCCGCCAAGGCTGCCCTGGTTGCCTTGTGCCTGTGCGCTGGCACTTGCCGC
CGCACTGGTCTACGGCGTGTTGGCCGGTTTTCAGGTGCCGGTGCAGCGTGCCTGCGTGATGCTGGCCATGGTGCTGCTCT
GGCGCCTGCGTTTTCGCCATCTGGGCGTTGGCTTGCCGCTGTTGCTGGCGCTGAACGCGGTGTTGCTGTGGGAGCCGCTG
GCCAGCTTGCAGCCGGGCTTCTGGTTATCGTTCGTGGCCGTGGCGATTCTGATCTTTACCTTCAGCGGCCGCCTTGGCGC
CTGGAACCCGTGGCTGGCCTGGGGTCGCGCCCAGTGGTTGATCGCCATCGGCTTGTTGCCGGTGTTGCTCGCGCAAGGTT
TGCCGGTGAGCTTGACGGCACCGCTGATCAACCTGCTGGCGGTGCCGTGGATCAGCCTTGCGGTGTTGCCGGCGGCGTTG
CTCGGCACCCTGTTGCTGGCGGTGCCGTATCTGGGGGAGGGGCTGTTGTGGCTGGCCGGTGGCTTGCTCGACGGTTTGTT
CCGGATGTTGGCAGAAGCCGCTGTCTGGCGCCCAGCCTGGCTGCCTGCGGCACTGCCTTTCTGGAGCTGGTTGCTGGTGT
GCCTGGGGGCGTTCCTGCTGCTGTTGCCGCGCGGCTTGCCGATGCGCGCCCTCGGCTGGCCTTTGTTGCTGCTGGCGGCA
TTTGCGCCACGGGAGCGCGTGCCCGAGGGCCAGGTGGAAGTCTGGCAACTGGATGTCGGCCAGGGGCTGGCGTTCATCTT
GCGCACCCGTCACCACGCCATGCTCTATGACGCGGGCCCGGCCATGGGCGATTTCGATTTGGGCGAGCGGGTGGTGCTAC
CCAGCTTGCACAAGCTGGGCGTGCGCCAGCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGACCACGCCGGCGGCGCT
CGCGCCGTTCAGCGCGGTTTGCCGGTACTACGGGTGCTCAGTGGCGAAGCGTCGGCCTTGCCTGCTGTGCTACAAGCGCA
ATCTTGCGGTAGCGGCGAGCGTTGGCAGTGGGACGGGGTCAATTTTTCCCTCTGGCAATGGCATGACGCCGGTGATAGCA
ACCAGGATTCCTGTGTGTTGCTGGTCGAGGCGCAAGGCGAGAAGCTGCTGCTCACCGGTGATCTCGATGCCCGTGGCGAG
CGGGCCTGGGTGCGGGATTGGCAGGCGGGCCAGGTCGATTGGCTGCAGTCGCCCCATCACGGCAGCCGCAGTTCCTCCAG
TGAGGCGCTGTTGAGCGCAACCGCCCCGCGTGGCGTGCTGATCTCCCGGGGGCGCTACAACGCCTTCGGTCATCCTCACC
CCGAGGTCATGGCGCGCTATCGGACGCACGGTATCCAGGCTTACGACAATGTCGAACACGGTGCGCTGCGCCTGCGCCTG
GGGGCGTTCGGCGAGCCTGAAGGGCTGCGCGCCCAGCGGCGTTTCTGGCGTGAGCCGAGATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(24-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.448

97.162

0.607
  comA Ralstonia pseudosolanacearum GMI1000

33.216

100

0.382