Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CAL7507_RS02240 Genome accession   NC_019682
Coordinates   499761..501287 (+) Length   508 a.a.
NCBI ID   WP_015126793.1    Uniprot ID   -
Organism   Calothrix sp. PCC 7507     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 494761..506287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAL7507_RS02210 (Cal7507_0466) mazG 495013..495828 (-) 816 WP_015126789.1 nucleoside triphosphate pyrophosphohydrolase -
  CAL7507_RS02215 (Cal7507_0467) - 495818..496438 (-) 621 WP_015126790.1 metal-binding protein -
  CAL7507_RS02225 (Cal7507_0468) - 497219..497737 (-) 519 WP_015126791.1 DUF456 domain-containing protein -
  CAL7507_RS02230 (Cal7507_0469) - 498070..498723 (-) 654 WP_015126792.1 cofactor assembly of complex C subunit B -
  CAL7507_RS02235 (Cal7507_0470) rpaB 498862..499590 (-) 729 WP_011318678.1 response regulator transcription factor RpaB -
  CAL7507_RS02240 (Cal7507_0471) radA 499761..501287 (+) 1527 WP_015126793.1 DNA repair protein RadA Machinery gene
  CAL7507_RS02245 (Cal7507_0472) - 501518..501922 (+) 405 WP_015126794.1 VOC family protein -
  CAL7507_RS02250 (Cal7507_0473) - 501922..502416 (+) 495 WP_015126795.1 GNAT family N-acetyltransferase -
  CAL7507_RS02255 (Cal7507_0474) - 502449..503033 (-) 585 WP_015126796.1 Uma2 family endonuclease -
  CAL7507_RS02260 (Cal7507_0475) - 503375..504049 (+) 675 WP_015126797.1 ComF family protein -
  CAL7507_RS02265 (Cal7507_0476) - 504131..504589 (+) 459 WP_015126798.1 PPC domain-containing protein -
  CAL7507_RS02270 (Cal7507_0477) cobS 504695..505456 (-) 762 WP_042341150.1 adenosylcobinamide-GDP ribazoletransferase -
  CAL7507_RS02275 (Cal7507_0480) - 505817..506269 (+) 453 WP_015126802.1 hypothetical protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54687.61 Da        Isoelectric Point: 4.9957

>NTDB_id=54702 CAL7507_RS02240 WP_015126793.1 499761..501287(+) (radA) [Calothrix sp. PCC 7507]
MAKPKTFYICNECGSESPQWFGKCPACGTYNSLEEQISIQSSGDVPTRGGVGNWQSTQTNGKSHAKPAKARASLTFEQIT
DRQIARWESGYEELDRVLGGGIVPGSMVLIGGDPGIGKSTLLLQVSNKLAQRYRILYISGEESGQQIKLRASRLGVSNTV
TVVDDVKELVVVENPQEIAPDTVGADLYVLPETDLEEILREIDSLRPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAAL
MKVAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVANGLREVPNPS
ELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGIDYNRLVQILAVLEKRVGIPMSKLDSYVASAG
GLNVGEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGQKFPDLNIEILP
VSKVIDAIIAAIPHQELTEDDLAPDTDE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=54702 CAL7507_RS02240 WP_015126793.1 499761..501287(+) (radA) [Calothrix sp. PCC 7507]
ATGGCAAAGCCTAAAACCTTTTATATTTGTAACGAATGTGGTTCAGAATCGCCTCAATGGTTCGGCAAATGTCCAGCTTG
CGGGACTTATAATTCTCTAGAAGAGCAAATTTCTATACAATCTTCAGGAGACGTACCTACGCGCGGGGGAGTAGGTAATT
GGCAATCAACTCAAACTAATGGCAAATCTCACGCTAAACCGGCTAAAGCCAGAGCTTCATTAACATTTGAACAAATAACC
GATCGCCAAATTGCTCGTTGGGAGTCAGGTTATGAAGAACTAGATCGGGTGCTTGGTGGTGGGATTGTCCCCGGTTCTAT
GGTGCTGATTGGTGGCGATCCTGGTATCGGTAAATCTACTCTATTATTACAGGTATCAAATAAACTGGCGCAGAGATATC
GCATTCTTTACATATCTGGGGAAGAATCAGGACAACAAATCAAGCTGCGAGCTTCTCGTTTGGGAGTCTCTAATACTGTC
ACTGTAGTTGATGATGTTAAAGAACTGGTGGTCGTGGAGAATCCTCAAGAAATTGCACCTGACACCGTCGGCGCAGATTT
GTATGTTTTGCCAGAAACTGATTTAGAAGAAATTCTTCGGGAAATAGATTCTTTGAGGCCGAATGTGGCGGTGATTGATA
GTATCCAAACGGTGTTTTTTCCGGCTCTTACCTCGGCACCCGGTTCTGTAGCTCAGGTGCGAGAATGTACAGCAGCACTG
ATGAAAGTGGCAAAGCATGAAGACATCACAATGTTAATTGTGGGACACGTTACGAAAGAAGGGGCGATCGCTGGTCCGAA
AGTTTTAGAGCATTTAGTTGATACGGTATTGTATTTTGAAGGCGATCGCTTTGCCTCCCATCGATTATTACGAACAGTAA
AAAACCGCTTTGGCGCGACTCACGAAATTGGTATCTTTGAAATGGTAGCGAACGGATTACGGGAAGTGCCTAACCCTTCA
GAGCTATTTTTAGGCAACCGTGATGATCCGGCTCCTGGTACTGCCATTGTGGTAGCTTGTGAGGGGACTCGTCCAATTGT
GGTTGAGTTGCAAGCCTTGGTGAGTCCGACAAGTTATCCTTCCCCTCGCCGTGCGGGGACTGGTATAGACTATAACCGCT
TGGTGCAAATCCTCGCCGTGTTAGAAAAACGGGTGGGAATTCCCATGTCTAAATTAGATTCTTACGTCGCTTCTGCGGGT
GGGTTGAATGTCGGCGAACCAGCAGTAGATTTAGGGATAGCGATCGCTATTGTAGCGAGTTTCCGCGATCGCATTGTTGA
TCCAGGGACAGTTTTAATTGGGGAAGTTGGGTTAGGTGGACAAGTGCGATCGGTTTCGCAAATGGAACTGCGGTTGAAAG
AAGCAGCCAAACTGGGATTTAAAAGAGCGATCGTTCCCAAAGGGCAAAAATTTCCCGATCTGAATATCGAGATCTTACCA
GTTTCCAAAGTCATCGATGCAATTATTGCCGCCATCCCACACCAGGAACTGACAGAGGATGATTTAGCACCGGATACAGA
CGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(407-467)

KaiC (ATPase)

(89-296)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.71

97.047

0.492
  radA Streptococcus mitis SK321

45.621

96.654

0.441
  radA Streptococcus mitis NCTC 12261

47.323

91.929

0.435
  radA Streptococcus pneumoniae Rx1

47.323

91.929

0.435
  radA Streptococcus pneumoniae D39

47.323

91.929

0.435
  radA Streptococcus pneumoniae R6

47.323

91.929

0.435
  radA Streptococcus pneumoniae TIGR4

47.323

91.929

0.435

Multiple sequence alignment