Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   H020_RS0108095 Genome accession   NZ_AKVY01000001
Coordinates   1535448..1536125 (-) Length   225 a.a.
NCBI ID   WP_000548959.1    Uniprot ID   Q9S1K2
Organism   Streptococcus pneumoniae TIGR4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1530448..1541125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H020_RS0108075 - 1530611..1531240 (-) 630 WP_000762083.1 NAD(P)-dependent oxidoreductase -
  H020_RS14695 - 1531477..1531851 (+) 375 Protein_1531 hypothetical protein -
  H020_RS0108080 - 1532108..1532431 (+) 324 WP_000422779.1 MazG-like protein -
  H020_RS0108085 thrS 1532489..1534432 (+) 1944 WP_000608356.1 threonine--tRNA ligase -
  H020_RS0108090 - 1534481..1535455 (-) 975 WP_000887954.1 HAMP domain-containing histidine kinase -
  H020_RS0108095 braR 1535448..1536125 (-) 678 WP_000548959.1 response regulator transcription factor Regulator
  H020_RS0108100 - 1536281..1537354 (+) 1074 WP_001273813.1 DUF2974 domain-containing protein -
  H020_RS0108105 - 1537445..1537747 (-) 303 WP_000281606.1 hypothetical protein -
  H020_RS0108110 - 1537815..1538252 (-) 438 WP_001166786.1 Rrf2 family transcriptional regulator -
  H020_RS0108115 - 1538328..1539170 (-) 843 WP_000160943.1 metallophosphoesterase family protein -
  H020_RS0108120 - 1539282..1539932 (+) 651 WP_000188505.1 metal-dependent transcriptional regulator -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25964.16 Da        Isoelectric Point: 5.1362

>NTDB_id=54702 H020_RS0108095 WP_000548959.1 1535448..1536125(-) (braR) [Streptococcus pneumoniae TIGR4]
MHKILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNGYHWCQEIRKISKVPIMFLSS
RDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQIL
RVLFEHAGNIVARDDLMRELWNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGLKHA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=54702 H020_RS0108095 WP_000548959.1 1535448..1536125(-) (braR) [Streptococcus pneumoniae TIGR4]
ATGCACAAGATTTTATTAATAGAAGATGATCAGGTCATTCGTCAACAGATTGGGAAAATGCTCTCTGAATGGGGATTTGA
AGTGGTCCTGGTAGAAGACTTTATGGAAGTTTTGAGTCTATTTGTTCAGTCGGAACCTCATCTGGTCCTCATGGATATTG
GTTTGCCCTTGTTTAATGGTTATCACTGGTGTCAGGAAATCCGCAAGATTTCCAAGGTACCTATCATGTTTCTTTCTTCG
AGAGACCAGGCTATGGATATTGTCATGGCAATCAATATGGGGGCGGATGACTTTGTGACCAAGCCTTTTGACCAGCAGGT
TCTTTTAGCTAAGGTTCAGGGCTTGTTGCGTCGTTCCTATGAGTTTGGGCGTGATGAGAGTTTGCTGGAATATGCTGGTG
TTATCCTCAATACCAAATCCATGGATTTACATTATCAAGGGCAAGTCTTGAATTTGACCAAGAATGAATTCCAGATTTTA
CGCGTGTTATTTGAGCATGCAGGCAACATCGTAGCACGTGACGACCTGATGCGGGAACTTTGGAACAGTGACTTTTTCAT
TGATGATAATACCCTCTCTGTCAATGTGGCTCGTTTGCGTAAAAAGTTGGAGGAGCAGGGATTGGTAGGATTTATCGAGA
CCAAGAAAGGAATAGGGTACGGATTGAAGCATGCTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9S1K2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.624

96.889

0.471
  vicR Streptococcus mutans UA159

35.319

100

0.369

Multiple sequence alignment