Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LP473_RS01970 Genome accession   NZ_CP087699
Coordinates   391468..392250 (+) Length   260 a.a.
NCBI ID   WP_010905316.1    Uniprot ID   Q9CIG2
Organism   Lactococcus lactis subsp. lactis strain IBB417     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 386468..397250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP473_RS01945 (LP473_01945) vicX 386491..387303 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LP473_RS01950 (LP473_01950) vicK 387474..388916 (-) 1443 WP_014570382.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LP473_RS01955 (LP473_01955) yycF 388909..389610 (-) 702 WP_003131580.1 response regulator YycF -
  LP473_RS01960 (LP473_01960) tmk 389788..390423 (+) 636 WP_003131575.1 dTMP kinase -
  LP473_RS01965 (LP473_01965) - 390556..391416 (+) 861 WP_252172451.1 DNA polymerase III subunit delta' -
  LP473_RS01970 (LP473_01970) yaaT 391468..392250 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator
  LP473_RS01975 (LP473_01975) yabA 392243..392569 (+) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  LP473_RS01980 (LP473_01980) rsmI 392569..393444 (+) 876 WP_010905318.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LP473_RS01985 (LP473_01985) - 393521..393712 (-) 192 WP_252174841.1 hypothetical protein -
  LP473_RS01990 (LP473_01990) mvk 393775..394707 (-) 933 WP_003131564.1 mevalonate kinase -
  LP473_RS01995 (LP473_01995) mvaD 395013..395969 (+) 957 WP_010905319.1 diphosphomevalonate decarboxylase -
  LP473_RS02000 (LP473_02000) - 395956..396945 (+) 990 WP_003131562.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29803.27 Da        Isoelectric Point: 6.0566

>NTDB_id=546870 LP473_RS01970 WP_010905316.1 391468..392250(+) (yaaT) [Lactococcus lactis subsp. lactis strain IBB417]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=546870 LP473_RS01970 WP_010905316.1 391468..392250(+) (yaaT) [Lactococcus lactis subsp. lactis strain IBB417]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTCGACCAAATGCA
ACTTTTTATTTCGTTTACAGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCTAAAATTCATGGTGGACTTGGACCTTGTGGACGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

46.119

84.231

0.388