Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LP473_RS01945 Genome accession   NZ_CP087699
Coordinates   386491..387303 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis subsp. lactis strain IBB417     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 381491..392303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP473_RS01920 (LP473_01920) ytpR 381717..382343 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  LP473_RS01925 (LP473_01925) - 382506..383846 (+) 1341 WP_014570381.1 FAD-dependent oxidoreductase -
  LP473_RS01930 (LP473_01930) - 383936..384325 (+) 390 WP_010905314.1 single-stranded DNA-binding protein -
  LP473_RS01935 (LP473_01935) groES 384445..384729 (+) 285 WP_003131589.1 co-chaperone GroES -
  LP473_RS01940 (LP473_01940) groL 384817..386445 (+) 1629 WP_153927324.1 chaperonin GroEL -
  LP473_RS01945 (LP473_01945) vicX 386491..387303 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LP473_RS01950 (LP473_01950) vicK 387474..388916 (-) 1443 WP_014570382.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LP473_RS01955 (LP473_01955) yycF 388909..389610 (-) 702 WP_003131580.1 response regulator YycF -
  LP473_RS01960 (LP473_01960) tmk 389788..390423 (+) 636 WP_003131575.1 dTMP kinase -
  LP473_RS01965 (LP473_01965) - 390556..391416 (+) 861 WP_252172451.1 DNA polymerase III subunit delta' -
  LP473_RS01970 (LP473_01970) yaaT 391468..392250 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=546867 LP473_RS01945 WP_003131583.1 386491..387303(-) (vicX) [Lactococcus lactis subsp. lactis strain IBB417]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=546867 LP473_RS01945 WP_003131583.1 386491..387303(-) (vicX) [Lactococcus lactis subsp. lactis strain IBB417]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685