Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   J3R87_RS12100 Genome accession   NZ_CP071594
Coordinates   2467364..2468050 (-) Length   228 a.a.
NCBI ID   WP_001794049.1    Uniprot ID   A0A0E1X4U4
Organism   Staphylococcus aureus strain PNID0137     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2462364..2473050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R87_RS12080 (J3R87_12080) rpsT 2463278..2463529 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  J3R87_RS12085 (J3R87_12085) holA 2463574..2464548 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  J3R87_RS12090 (J3R87_12090) comEC 2464605..2466806 (-) 2202 WP_000967506.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J3R87_RS12095 (J3R87_12095) - 2466811..2467272 (-) 462 WP_000439692.1 ComE operon protein 2 -
  J3R87_RS12100 (J3R87_12100) comEA 2467364..2468050 (-) 687 WP_001794049.1 ComEA family DNA-binding protein Machinery gene
  J3R87_RS12105 (J3R87_12105) - 2468090..2468806 (-) 717 WP_000084835.1 class I SAM-dependent methyltransferase -
  J3R87_RS12110 (J3R87_12110) rsfS 2468809..2469162 (-) 354 WP_001088020.1 ribosome silencing factor -
  J3R87_RS12115 (J3R87_12115) yqeK 2469163..2469747 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  J3R87_RS12120 (J3R87_12120) nadD 2469737..2470306 (-) 570 WP_000822938.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  J3R87_RS12125 (J3R87_12125) yhbY 2470309..2470599 (-) 291 WP_000955232.1 ribosome assembly RNA-binding protein YhbY -
  J3R87_RS12130 (J3R87_12130) aroE 2470603..2471409 (-) 807 WP_000666750.1 shikimate dehydrogenase -
  J3R87_RS12135 (J3R87_12135) yqeH 2471423..2472523 (-) 1101 WP_001280134.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25766.38 Da        Isoelectric Point: 9.3383

>NTDB_id=546813 J3R87_RS12100 WP_001794049.1 2467364..2468050(-) (comEA) [Staphylococcus aureus strain PNID0137]
MVLLYQFLLRYKDFLAQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTVLKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLNSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=546813 J3R87_RS12100 WP_001794049.1 2467364..2468050(-) (comEA) [Staphylococcus aureus strain PNID0137]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAGCTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
TTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAATTCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1X4U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

95.595

99.561

0.952
  comEA Staphylococcus aureus N315

95.595

99.561

0.952