Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   BKM84_RS07080 Genome accession   NZ_CP071592
Coordinates   1390478..1391659 (-) Length   393 a.a.
NCBI ID   WP_002894094.1    Uniprot ID   A0A1J6L696
Organism   Campylobacter jejuni subsp. jejuni strain GB19     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1385478..1396659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM84_RS07050 (BKM84_07050) - 1386023..1386364 (+) 342 WP_002784057.1 hypothetical protein -
  BKM84_RS07055 (BKM84_07055) flgM 1386427..1386624 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  BKM84_RS07060 (BKM84_07060) - 1386666..1387100 (+) 435 WP_002779263.1 flagellar protein FlgN -
  BKM84_RS07065 (BKM84_07065) flgK 1387110..1388936 (+) 1827 WP_002894098.1 flagellar hook-associated protein FlgK -
  BKM84_RS07070 (BKM84_07070) - 1388953..1389717 (+) 765 WP_002894096.1 TIGR02757 family protein -
  BKM84_RS07075 (BKM84_07075) - 1389721..1390485 (+) 765 WP_002855821.1 TSUP family transporter -
  BKM84_RS07080 (BKM84_07080) ctsF 1390478..1391659 (-) 1182 WP_002894094.1 type II secretion system F family protein Machinery gene
  BKM84_RS07085 (BKM84_07085) ctsE 1391656..1393215 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  BKM84_RS07090 (BKM84_07090) ctsX 1393205..1393792 (-) 588 WP_002851370.1 membrane protein Machinery gene
  BKM84_RS07095 (BKM84_07095) ctsP 1393796..1394404 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  BKM84_RS07100 (BKM84_07100) ctsD 1394397..1395809 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BKM84_RS07105 (BKM84_07105) ctsR 1395787..1396098 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45736.38 Da        Isoelectric Point: 9.2540

>NTDB_id=546774 BKM84_RS07080 WP_002894094.1 1390478..1391659(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain GB19]
MKFYEVEFLKNNQNYTKTIKAENLNIAQTKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIKE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDSYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=546774 BKM84_RS07080 WP_002894094.1 1390478..1391659(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain GB19]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAACAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTCATACTCTTTTTTAAAGAGCTGGCTTTATTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAAAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATAGCTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J6L696

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.959

99.746

0.977