Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   LO759_RS10305 Genome accession   NZ_CP087675
Coordinates   2152507..2152836 (+) Length   109 a.a.
NCBI ID   WP_023116253.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain P93127     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2147507..2157836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO759_RS10290 (LO759_10290) - 2148307..2149263 (+) 957 WP_003104579.1 UDP-glucose 4-epimerase family protein -
  LO759_RS10295 (LO759_10295) - 2149265..2150284 (+) 1020 WP_003158833.1 MraY family glycosyltransferase -
  LO759_RS10300 (LO759_10300) - 2150319..2152316 (+) 1998 WP_023128731.1 polysaccharide biosynthesis protein -
  LO759_RS10305 (LO759_10305) comEA/comE1 2152507..2152836 (+) 330 WP_023116253.1 ComEA family DNA-binding protein Machinery gene
  LO759_RS10315 (LO759_10315) - 2153053..2154249 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  LO759_RS10320 (LO759_10320) uvrB 2154437..2156449 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11427.41 Da        Isoelectric Point: 8.0374

>NTDB_id=546775 LO759_RS10305 WP_023116253.1 2152507..2152836(+) (comEA/comE1) [Pseudomonas aeruginosa strain P93127]
MHLIKSALLLILFACLPFSAYAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=546775 LO759_RS10305 WP_023116253.1 2152507..2152836(+) (comEA/comE1) [Pseudomonas aeruginosa strain P93127]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTACGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385