Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   J3R86_RS08555 Genome accession   NZ_CP071589
Coordinates   1861856..1862899 (-) Length   347 a.a.
NCBI ID   WP_207516936.1    Uniprot ID   -
Organism   Staphylococcus simiae strain 17941E     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1856856..1867899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R86_RS08525 (J3R86_08525) - 1857087..1858331 (-) 1245 WP_207516932.1 aminopeptidase -
  J3R86_RS08530 (J3R86_08530) - 1858345..1858545 (-) 201 WP_088177495.1 DUF1128 family protein -
  J3R86_RS08535 (J3R86_08535) - 1858692..1859156 (+) 465 WP_207516933.1 low molecular weight protein-tyrosine-phosphatase -
  J3R86_RS08540 (J3R86_08540) - 1859163..1859438 (+) 276 WP_207516934.1 YtxH domain-containing protein -
  J3R86_RS08545 (J3R86_08545) - 1859809..1861026 (+) 1218 WP_207516935.1 YihY/virulence factor BrkB family protein -
  J3R86_RS08550 (J3R86_08550) vraR 1861237..1861866 (-) 630 WP_002464447.1 two-component system response regulator VraR Regulator
  J3R86_RS08555 (J3R86_08555) vraS 1861856..1862899 (-) 1044 WP_207516936.1 sensor histidine kinase Regulator
  J3R86_RS08560 (J3R86_08560) liaF 1862896..1863597 (-) 702 WP_207516937.1 cell wall-active antibiotics response protein LiaF -
  J3R86_RS08565 (J3R86_08565) - 1863612..1863998 (-) 387 WP_207516938.1 hypothetical protein -
  J3R86_RS08570 (J3R86_08570) map 1864235..1864990 (-) 756 WP_207516939.1 type I methionyl aminopeptidase -
  J3R86_RS08575 (J3R86_08575) - 1865167..1866153 (+) 987 WP_207516940.1 aromatic acid exporter family protein -
  J3R86_RS08580 (J3R86_08580) - 1866274..1866996 (-) 723 WP_207516941.1 type 1 glutamine amidotransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 40073.49 Da        Isoelectric Point: 5.2883

>NTDB_id=546741 J3R86_RS08555 WP_207516936.1 1861856..1862899(-) (vraS) [Staphylococcus simiae strain 17941E]
MNHYIRTIGSMLILVYSMLAAFFFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIIFLCIIVGSILAYKINQQNEWIKT
QIERSIEGETVGINDQNIELYSETIELYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETTLEPPLDQQIPILEKMVQDAQLEMRALLLHLRPLGLKDKSLGEGIKDLVVDLQKKVPMKVVHDI
QEFKVPKGIEDHLFRITQEAISNTLRHSDGTKVTVELFNNEDYLLLRIQDDGKGFDMNDKVKQSYGLKNMEERALEIGAT
FHIISMPDAGTRIEVKAPLNKEDSYDD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=546741 J3R86_RS08555 WP_207516936.1 1861856..1862899(-) (vraS) [Staphylococcus simiae strain 17941E]
ATGAATCACTATATAAGAACGATAGGTTCTATGTTGATTTTAGTATATAGTATGTTAGCGGCATTTTTCTTTATTGATAA
AGTGTTTGTTAATATCATTTATTTTCAAGGGATGTTTTATACCCAAATTTTTGGTATTCCAGTATTTCTATTTTTAAATT
TAATTATTATCTTCTTATGTATTATTGTAGGATCTATTTTAGCTTATAAGATTAATCAACAAAATGAATGGATTAAGACT
CAAATTGAACGCTCTATAGAAGGTGAAACTGTTGGTATTAATGACCAAAATATTGAACTGTATAGTGAAACGATTGAGTT
ATATCATACATTAGTGCCTTTAAATCAAGAATTACATAAATTAAGATTAAAGACACAAAATTTAACTAACGAAAATTATA
ATATTAATGATGTCAAAGTTAAAAAAATAATCGAAGATGAACGACAACGTCTAGCTAGAGAATTACATGACTCAGTCAGT
CAGCAATTATTCGCTGCTAGTATGATGCTTTCTGCAATTAAGGAGACGACTTTAGAGCCACCATTAGATCAACAAATTCC
TATTTTGGAAAAAATGGTGCAAGATGCGCAATTGGAGATGAGAGCACTATTATTACATTTAAGACCTCTAGGATTAAAAG
ATAAGTCATTAGGAGAGGGCATTAAAGACTTAGTTGTAGATTTACAGAAGAAAGTACCTATGAAAGTTGTCCATGACATT
CAAGAGTTCAAAGTACCAAAAGGAATTGAAGATCATTTATTTAGAATTACTCAAGAAGCAATTTCTAATACACTTAGACA
CTCCGATGGTACTAAAGTGACTGTTGAATTATTTAACAATGAAGATTATCTGTTATTAAGAATTCAAGATGACGGTAAAG
GCTTCGATATGAATGATAAAGTAAAACAAAGTTATGGCTTGAAGAATATGGAAGAAAGAGCATTAGAAATTGGTGCGACA
TTCCATATAATTTCAATGCCGGATGCAGGAACGCGTATAGAGGTAAAAGCACCTCTTAATAAGGAGGATTCATATGACGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

92.219

100

0.922